Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05093 ATGGCAAAGAGAAAATTGTTTACACTTTATGAAAATGCCAGTGAGAAACACGAAGTACAAAATTGGACAGAAAGATTGAGGCTTTGGCTAAAGGAACTATCTCCTATTTGGTTGGCAGCTCAGAGGGCAGTAGCTCGATATGAAGGGATTTTGTCACCAGTTGGTCCCCGTGAAAGGCTCTTGAGGAGAATGCTTTCTTGGATTGGACGTATTCCCCCTACACCAGAAACACCTTTTGAGGCTGACAATGATAATCAATCTCCTGAACCTTATTTAAGTTCATCAGTAAGTACTAGAGAACTTGGGTCTAGAAAGAGAAGGAAAAGGACGGTGAGAAAGCTTGAAGATTTTGTGGAAAATTTGAACCTATTGGGCCATGAAATTCAAATCCCTCAACCAGCAGAAGAAAGCAGCAAAAGAGAAGAGGATGAAGTTGAGGTGAACATTCAAAAAGATTTCAATTTCAGCAGTTATCTAAGTAACAACAGATGGGCAGATGTTGAAGTACAAGCACTCATAACTGTGAGAACTTCATTGGACCACAAGTTTCGTCTCATTGGATCTAAAGGATCATCAATATGGGAAGAGATATCTGAAACAATGCATGGCATGGGATACAAACGTTCTGCAAATAAGTGTAAGGAGAAGTGGGAAAACATCAACAAGTACTATAAGAGGACAGTGGGGAGCGGCAAGAAAAGGCGTCAAAATAGTAAAACTTGCCCTTACTTTGATGAGCTTGACATTCTATATAGAAATGGGCTCCTCAATCATGGAAATACGTTGAGCAATACCAACAGTGTTCCCAACCTTGAAGAAAAGGAAAAGAGTGAAACTTGA 840 0.4012 MAKRKLFTLYENASEKHEVQNWTERLRLWLKELSPIWLAAQRAVARYEGILSPVGPRERLLRRMLSWIGRIPPTPETPFEADNDNQSPEPYLSSSVSTRELGSRKRRKRTVRKLEDFVENLNLLGHEIQIPQPAEESSKREEDEVEVNIQKDFNFSSYLSNNRWADVEVQALITVRTSLDHKFRLIGSKGSSIWEEISETMHGMGYKRSANKCKEKWENINKYYKRTVGSGKKRRQNSKTCPYFDELDILYRNGLLNHGNTLSNTNSVPNLEEKEKSET. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05093 279 FunFam Trihelix transcription factor GT-2 164 226 - -
Seca1g05093 279 PANTHER FI21293P1 140 276 - -
Seca1g05093 279 MobiDBLite consensus disorder prediction 79 99 - -
Seca1g05093 279 Pfam Myb/SANT-like DNA-binding domain 162 248 IPR044822 -
Seca1g05093 279 Gene3D - 164 226 - -
Seca1g05093 279 MobiDBLite consensus disorder prediction 75 104 - -
Seca1g05093 279 CDD GT1 162 227 - -
Seca1g05093 279 ProSiteProfiles Myb-like domain profile. 156 221 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05093 Seca-Chr1 153733106 153741985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05093 156 252 Trihelix Transcription Factor Family AT1G76880 53.608 5.16e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca1g05093 Myb_DNA-bind_4 4.6e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05093 - - gmx:100820302 243.817