Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05082 ATGCCAAGCCTAATTACGCCCTATAGTCATCTTAAATCCTCCAACGTTCTTCTAAGTGAGAATTTGGAGCCAATTCTCAATGACTATGGGTTGGTACTAATGATAAACCAGGATCTTGCTCATGACATCATGGTGATCTACAAGACCCCAGAGTATTTGCAGCATGGCCGTGTTACAAAGAAGACATATGTGTGGAGTCTTGGGATACTTACTTTGCTTTTAATTCGGCATATCATTACAATATGGTTGGCTGCTAGCAAAATTGCCACTGACTTACATGCTTATTCCTTCTCTTATTACTCTCCCCCACATGGGAAAAGATTCTACAAACTCACCTTCCACAAGAGATATAGAGATCTCATCACTGTCTCTTACATCAAACATGTTTTGAAAGAAGGAAGGGAAATGGCTCTGAGAAACAGGCACAGGAAGCTTTATACCAACAGTCCAAGTAGTGCTTGGTATGGTTACAAACAATCAAAGTGGAGCCACATAGTATTTGAGCACCCTGCAACATTTGAGACACTTGCAATGGAGCAGAACAAGAAGGAAGAGATCATCAATGACCTTGTTAAGTTCAGAAATGGGAAGGACTATTATGCCAAGATTGGGAAGGCTTGGAAAAGTGGCTATTTACTCTACGGTCCTCCAGGGACAGGTATGTTCATAGCTGCTATGGCTAATTTCATGAACTATGATGTCTATGATCTTGAATTGACTGCAGTTAAGGACAACACTGAGCTAAGAAAGCTATTGATTGAAACTTCAAGTAGAGCTATTAAGGAACAAATTGAGGAAGAAGAACCAAAAGATCCTAGTAAGAAATATGAAGAGGAGAATAGCAAAAGCAGTAAGTCAAGAGTAGAATATGAGGAAGCACTGAGGCAATCTGTGACTGCCCCTAGTTCTGGGGACTTTGATGCAAATGGGTTTGTAGATAGTGTTATCAACTTTGCAACAGAGAACCCTGCAATTCTTGCTGGAGGAGTGGCTATTTTGGCTATTGTTGGCTATGAAGCATTTGAAAGGACAACGTTCTATGGAGTTGCTTCCAACTTGGTCAATTATCTCACAACTCAACTCCACGAAGACACTGTTTCATCAGTGAGGAATGTCAATAACTGGTCAGGATCTGTTTGGATAACACCAGATCTTGGAGCTTGA 1164 0.4081 MPSLITPYSHLKSSNVLLSENLEPILNDYGLVLMINQDLAHDIMVIYKTPEYLQHGRVTKKTYVWSLGILTLLLIRHIITIWLAASKIATDLHAYSFSYYSPPHGKRFYKLTFHKRYRDLITVSYIKHVLKEGREMALRNRHRKLYTNSPSSAWYGYKQSKWSHIVFEHPATFETLAMEQNKKEEIINDLVKFRNGKDYYAKIGKAWKSGYLLYGPPGTGMFIAAMANFMNYDVYDLELTAVKDNTELRKLLIETSSRAIKEQIEEEEPKDPSKKYEEENSKSSKSRVEYEEALRQSVTAPSSGDFDANGFVDSVINFATENPAILAGGVAILAIVGYEAFERTTFYGVASNLVNYLTTQLHEDTVSSVRNVNNWSGSVWITPDLGA. 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05082 387 SUPERFAMILY Protein kinase-like (PK-like) 8 86 IPR011009 -
Seca1g05082 387 Gene3D MFS general substrate transporter like domains 330 387 IPR036259 -
Seca1g05082 387 Gene3D - 161 300 IPR027417 -
Seca1g05082 387 Gene3D Transferase(Phosphotransferase) domain 1 8 137 - -
Seca1g05082 387 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 251 IPR027417 -
Seca1g05082 387 ProSiteProfiles Protein kinase domain profile. 1 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05082 387 PANTHER BCS1 AAA-TYPE ATPASE 102 268 - -
Seca1g05082 387 MobiDBLite consensus disorder prediction 263 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05082 Seca-Chr1 153682501 153685019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05082 1 75 Receptor kinase-like Gene Family AT5G35390 58.667 7.48e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca1g05082 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05082 - - gmx:100777731 340.502