Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05074 ATGGAGGTTATTAGAAGGAAGTCGCTGAAGCATTTGATCACGAAGGTGTTGAAGGGTCTTCAATTCTTGGCAATTAGCAGAGGTGCATATTCAAGATCAAGAGGTAATTATTATTATCTTCTGAGAGACGTAATTGATAAGGAGAATGTGCCAGAAGATGTTAGAGAAGGACATTTTGCGGTTATAGCAATGCACGGTGGAGAAACAAAAAGGTTCATTGTTGAGTTAGATTACTTAACTGACCCTGCTTTCTTGAGATTGCTGGAAGAGGCTAAGGAAGAGTATGGGTTTCAACAGAAGGGTGCTCTTGCAGTTCCTTGCAGTCCCCAACAACTTGAGTACATTATACAGAATCGACGATCCAATGGACTGGACAGAGCCACACTAGCTAGCTAA 396 0.4167 MEVIRRKSLKHLITKVLKGLQFLAISRGAYSRSRGNYYYLLRDVIDKENVPEDVREGHFAVIAMHGGETKRFIVELDYLTDPAFLRLLEEAKEEYGFQQKGALAVPCSPQQLEYIIQNRRSNGLDRATLAS. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05074 131 Pfam Auxin responsive protein 48 117 IPR003676 GO:0009733
Seca1g05074 131 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 34 114 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05074 Seca-Chr1 153566070 153566465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05074 51 122 Calmodulin-binding Proteins AT5G20810 41.667 3.05e-13 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05074 - K14488 gmx:100794597 150.599