Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca1g05067 | ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGTCTTGAGCTCGTGAGTGATGCCACTCCCACTCCTCAGTCTCACACATATAAAGCTACTCATAACCCACCAACAGAGGAGGGTGCTGCTGCTACTGCTCCAAGGGAAATGGAGACTTCTGAACCTAACAAAGATGGTGCTTCTGCTAGTGGTAGTAGTGGGGAGAAGCCTGAGAGTGTTCCCTCTGTGGGGTTTGGAGAGCTTTTCAGATTTGCTGATGGGTTGGATTATATTCTCATGTCAATTGGAACGGTTGGAGCAATAGTACATGGTTGTTCTTTGCCACTCTTTCTTCGGTTCTTTGCGGATCTTGTAAACTCTTTTGGGTCTAATGCTAATAACGTGGACAAGATGAGCCAGGAAGTAGTGAAGTATGCATTTTACTTCCTGGTGGTGGGTGCTGCTATATGGGCATCTTCATGGGCAGAGATTTCTTGTTGGATGTGGACTGGAGAGCGTCAATCAACCAAGATGAGGATCAAGTACTTGGAAGCTGCCTTGAGTCAGGACATTGAGTTCTTTGATACTGAGGTTCGAACATCTGATGTTGTTTTTGCTATCAACACTGATGCTGTGATGGTCCAGGATGCCATTAGTGAGAAGTTAGGGAATTTCATTCATTACATGGCCACTTTTGTTTCTGGTTTTGTTGTGGGTTTCACTGCTGTTTGGCAATTGGCTCTGGTCACACTTGCTGTAGTTCCTATGATAGCTGTGATTGGAGCCATTCACACTACCACGTTGGCTAAGCTCTCTAGTAAGAGCCAGGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAAACGGTTGTGCAAATCAGAGTAGTGTTTGCCTTTGTTGGGGAGTCACGAGCATTGCAAGCCTACTCATCAGCCTTGAAGGTTGCACAGAAGATTGGCTACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGAGCCACTTACTTTGTTGTTTTCTGCTGTTATGCACTTCTCCTGTGGTATGGAGGCTATCTTGTTAGGCATCATTACACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATTGGTGGATTGGGTTTGGGGCAATCTGCACCCAGCATGGCTGCATTTACAAAGGCCAGGGTTGCTGCTGCAAAGATTTTCCGTATAATTGATCACAAGCCTGGGATTGACCGAAATAGTGAATCTGGCTTGGAATTGGAGACAGTCACAGGGCTTGTGGAGCTGAAAAATGTGGACTTTTCATACCCATCAAGACCAGAGGTTCAGATTCTGAACAATTTCTCCTTGAATGTGCCTGCTGGAAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCTGGCAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGACCCAACTTCAGGACAAGTTCTGCTAGATGGTCATGACATTAAAACATTGAAGCTTAGATGGCTGAGGCAGCAGATAGGATTGGTGAGCCAAGAGCCTGCTTTATTTGCTACCACAATTAGAGAAAATATACTGTTGGGCAGACCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCCAATGCCCATTCCTTCATCATCAAACTTCCTGAAGGCTATGATACCCTGGTAGGAGAAAGAGGGCTGCATCTTTCTGGAGGGCAAAAACAAAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCAGCAATTCTTCTCCTAGATGAGGCAACAAGTGCATTAGACTCAGAATCAGAAAAACTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTGATTGCTCATCGCCTCTCTACTATTCGCAAAGCTGATCTTGTAGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTTTCTAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCACATGAAACTGCTATGAATAATGCTAGAAAGAGCAGTGCAAGGCCTTCAAGTGCCAGAAACTCAGTAAGCTCACCCATAATTGCTAGAAATTCTTCTTATGGCCGGTCACCATACTCACGTAGGCTGTCTGATTTCTCTACATCTGATTTTAGTCTGTCCCTTGATGCATCACATCCAAATTACAGACTTGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGCTCTATAGGGTCTGTTGTTTGTGGATCCCTTAGTGCATTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTCTATTACAATCCAGACCACAGATACATGATCCGACAAATAGACAAGTACTGCTACTTGTTGATTGGACTTTCATCAACTGCACTTCTTTTCAATACCTTGCAACACTTCTTCTGGGATATTGTTGGGGAAAATCTTACAAAACGTGTAAGGGAGAAAATGCTGACAGCAGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATAGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCTTGTACTGCAGGTTTTGTGTTACAATGGCGCCTTGCCCTTGTCCTCATAGCAGTTTTCCCTGTTGTTGTTGCAGCCACAGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACATGGAAGCTGCTCATGCTAAGGCCACACAACTAGCAGGAGAGGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAACAAAAATTGTTGGCCTTTTCAGCTCCAACCTTGAAACTCCACTACAAAGATGCTTTTGGAAAGGACAGATTTCTGGAAGTGGATATGGGATAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGTTAGTGAAGCATGGAATCTCTGACTTCTCTAAAACAATCAGAGTTTTTATGGTCCTCATGGTATCTGCCAATGGTGCTGCTGAAACTTTAACACTTGCTCCTGACTTCATCAAAGGAGGTAGAGCCATGAAGTCAGTCTTTGATCTCCTTGACCGCAGAACTGAAATTGAACCAGATGATCAAGATGCTACTCCTGTTCCAGATCGTCTTAGAGGTGAAGTTGAACTTAAACATGTGGATTTCTCTTATCCTACTCGCCCAGATATGCCAGTTTTTCGTGATCTTAATCTTCGCGCAAGAGCTGGTAAAACTCTTGCACTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTGATTGCACTTATACAAAGATTCTATGATCCAACATCTGGTAGAGTCATGATTGATGGGAAGGACATAAGGAAATACAACCTTAAGTCCTTAAGAAGGCACATTTCTGTGGTACCTCAAGAGCCATGCTTGTTTGCTACTACTATTTATGAAAACATTGCTTATGGACATGAATCAGCTACTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCTCATAAGTTCATATCTGCTTTGCCTGATGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAACTCTCTGGGGGACAAAAGCAGAGAATAGCAGTTGCTAGAGCTTTTGTGAGGAAAGCTGAGCTTATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAAGAGGCTCTAGACCGTGCCTCATCAGGAAAAACAACTATCATTGTTGCACATAGGCTATCAACTATCAGAAATGCCAATGTCATTGCTGTGATTGATGATGGGAAAGTAGCTGAACAAGGCTCCCATTCACAGTTGTTGAAAAATCACCCAGATGGGATTTATGCACGCATGATTCAATTACAAAGGTTCACACATAGTCAAGTAATTGGGATGGCCTCTGGTTCAAGTTCTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG | 4038 | 0.4376 | MSQDSEEIKTIEQWKWSEMQGLELVSDATPTPQSHTYKATHNPPTEEGAAATAPREMETSEPNKDGASASGSSGEKPESVPSVGFGELFRFADGLDYILMSIGTVGAIVHGCSLPLFLRFFADLVNSFGSNANNVDKMSQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALSQDIEFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIVEQTVVQIRVVFAFVGESRALQAYSSALKVAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPGIDRNSESGLELETVTGLVELKNVDFSYPSRPEVQILNNFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPEGYDTLVGERGLHLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPDHRYMIRQIDKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDMEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFSSNLETPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMKSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESATEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNANVIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHSQVIGMASGSSSSTRPKDDEREG. | 1346 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca1g05067 | 1345 | FunFam | ABC transporter B family member 1 | 87 | 422 | - | - | |
Seca1g05067 | 1345 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 415 | 663 | IPR027417 | - | |
Seca1g05067 | 1345 | Pfam | ABC transporter | 442 | 591 | IPR003439 | GO:0005524 | |
Seca1g05067 | 1345 | CDD | ABC_MTABC3_MDL1_MDL2 | 1079 | 1318 | - | - | |
Seca1g05067 | 1345 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 756 | 1043 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca1g05067 | 1345 | MobiDBLite | consensus disorder prediction | 22 | 80 | - | - | |
Seca1g05067 | 1345 | PANTHER | ABC TRANSPORTER B FAMILY | 63 | 769 | IPR039421 | - | |
Seca1g05067 | 1345 | CDD | ABC_MTABC3_MDL1_MDL2 | 424 | 663 | - | - | |
Seca1g05067 | 1345 | Pfam | ABC transporter transmembrane region | 757 | 1026 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca1g05067 | 1345 | Pfam | ABC transporter transmembrane region | 101 | 373 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca1g05067 | 1345 | ProSitePatterns | ABC transporters family signature. | 1218 | 1232 | IPR017871 | GO:0005524|GO:0016887 | |
Seca1g05067 | 1345 | FunFam | ABC transporter B family member 1 | 735 | 1044 | - | - | |
Seca1g05067 | 1345 | Pfam | ABC transporter | 1098 | 1246 | IPR003439 | GO:0005524 | |
Seca1g05067 | 1345 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 102 | 389 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Seca1g05067 | 1345 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1070 | 1318 | IPR027417 | - | |
Seca1g05067 | 1345 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 745 | 1061 | - | - | |
Seca1g05067 | 1345 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 100 | 397 | - | - | |
Seca1g05067 | 1345 | FunFam | ABC transporter B family member 1 | 414 | 664 | - | - | |
Seca1g05067 | 1345 | SUPERFAMILY | ABC transporter transmembrane region | 88 | 408 | IPR036640 | GO:0005524|GO:0016020 | |
Seca1g05067 | 1345 | Gene3D | ABC transporter type 1, transmembrane domain | 147 | 1052 | IPR036640 | GO:0005524|GO:0016020 | |
Seca1g05067 | 1345 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1079 | 1315 | IPR003439 | GO:0005524 | |
Seca1g05067 | 1345 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 424 | 660 | IPR003439 | GO:0005524 | |
Seca1g05067 | 1345 | FunFam | ABC transporter B family member 19 | 1045 | 1067 | - | - | |
Seca1g05067 | 1345 | ProSitePatterns | ABC transporters family signature. | 563 | 577 | IPR017871 | GO:0005524|GO:0016887 | |
Seca1g05067 | 1345 | FunFam | ABC transporter B family member 1 | 1069 | 1319 | - | - | |
Seca1g05067 | 1345 | MobiDBLite | consensus disorder prediction | 63 | 77 | - | - | |
Seca1g05067 | 1345 | MobiDBLite | consensus disorder prediction | 1326 | 1345 | - | - | |
Seca1g05067 | 1345 | MobiDBLite | consensus disorder prediction | 24 | 41 | - | - | |
Seca1g05067 | 1345 | SUPERFAMILY | ABC transporter transmembrane region | 743 | 1063 | IPR036640 | GO:0005524|GO:0016020 | |
Seca1g05067 | 1345 | SMART | AAA_5 | 451 | 637 | IPR003593 | GO:0016887 | |
Seca1g05067 | 1345 | SMART | AAA_5 | 1106 | 1298 | IPR003593 | GO:0016887 | |
Seca1g05067 | 1345 | Gene3D | - | 1070 | 1325 | IPR027417 | - | |
Seca1g05067 | 1345 | Gene3D | - | 422 | 687 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca1g05067 | Seca-Chr1 | 153463658 | 153470202 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca1g05067 | 47 | 1340 | Calmodulin-binding Proteins | AT2G36910 | 87.876 | 0.0 | 2323 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca1g05067 | K05658 | - | gmx:100814667 | 2390.92 |