Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05066 ATGGGCAGAGCTCCTTGCTGTGACAAGGCAAATGTAAAGAAAGGACCATGGTCTCCTGAAGAAGATGCAAAACTAAAGGAGTACATAGAGAAACATGGAACTGGAGGAAACTGGATTGCTCTCCCAAAGAAAGTTGGATTGTGTTTGTTTTCAGGTTTGAAAAGATGTGGTAAGAGCTGTAGACTAAGATGGCTTAATTATCTCAGACCCAACATTAAGCATGGAGAGTTCTCTGATGCAGAAGATAAAATAATCTGCACACTCTTTGCAAGCATTGGAAGCAGGTGGTCAATAATTGCATCTCAATTGCCAGGCAGGACTGACAATGATATAAAGAACTATTGGAACACCAAGCTTAAGAAAAAAATGATGGCCATGAATCATTCAGCAGAAAGGAAACCTCAACAAGCTACCCTTTTATCAATGCTTCAAAATTCAACACCATCTTCATCATTATCATTCAGAGAAAGCAACAACTCATACTACTACCACCCTCATGGATCTTTCACAGGATCATTTTCCTACTCATCAACAACATCAAGTCTTTTGAGTGGAAATTCTACCACTTCTGCTTCTTCTAACTCCATATTTCAAGCACAAGAAAATTTCATTGATCCCACTCAATTCAAAGCTAGCAATAGAAGCTTTGTGTTTGGTGGTGAAGCTACTAGTTGCAGCTCTTCTGATGGTAGCAGCAACAACCAGATCAGTCATGTTATAGAACCAGAGTTTGGATATGGTGATGCAACTTTTGTAGAGCAAATAGGTGCAGTTAATTACCTCTACAGTGGGGTGGAAGATAGCCAGAAGTTGATGTTCTCTAATGCTGGTAGTGTTAGTGGGTGGACAGAGAAACAAAGTGGGTTGTGGGGAGAAAATCCATTGGATTATGGTCTAGAAGAAATAAAACAGCTAATAAGCACTAATAGTTGCAATAACTTTTTGTTTGATGACAAGAAGACAGAGCAAAGTGTCATGTACTACTGA 987 0.3931 MGRAPCCDKANVKKGPWSPEEDAKLKEYIEKHGTGGNWIALPKKVGLCLFSGLKRCGKSCRLRWLNYLRPNIKHGEFSDAEDKIICTLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNHSAERKPQQATLLSMLQNSTPSSSLSFRESNNSYYYHPHGSFTGSFSYSSTTSSLLSGNSTTSASSNSIFQAQENFIDPTQFKASNRSFVFGGEATSCSSSDGSSNNQISHVIEPEFGYGDATFVEQIGAVNYLYSGVEDSQKLMFSNAGSVSGWTEKQSGLWGENPLDYGLEEIKQLISTNSCNNFLFDDKKTEQSVMYY. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05066 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 68 IPR017930 -
Seca1g05066 328 Pfam Myb-like DNA-binding domain 14 68 IPR001005 -
Seca1g05066 328 Pfam Myb-like DNA-binding domain 75 117 IPR001005 -
Seca1g05066 328 CDD SANT 76 119 IPR001005 -
Seca1g05066 328 FunFam Transcription factor RAX3 7 74 - -
Seca1g05066 328 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Seca1g05066 328 Gene3D - 76 141 - -
Seca1g05066 328 Gene3D - 7 74 - -
Seca1g05066 328 SMART sant 13 70 IPR001005 -
Seca1g05066 328 SMART sant 73 121 IPR001005 -
Seca1g05066 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Seca1g05066 328 ProSiteProfiles Myb-like domain profile. 9 68 IPR001005 -
Seca1g05066 328 PANTHER OS09G0431300 PROTEIN 1 305 - -
Seca1g05066 328 SUPERFAMILY Homeodomain-like 11 115 IPR009057 -
Seca1g05066 328 CDD SANT 16 68 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05066 Seca-Chr1 153431258 153432583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05066 1 133 MYB Transcription Factor Family AT5G57620 76.692 7.06e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g05066 Myb_DNA-binding 8.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05066 K09422 - gmx:778084 447.203