Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05058 ATGGCGAGTCCGTTCAATGTTCACGACTTCGACGAGAACCTGTATGCAGCAGTAGAAGAATTCTTGGGTGACGCAGCAGGGTATGGAGTCACCGAAGACGAAGAAGACGACGACGACGAAGATGAAGAAGAAGACGAAGAAGAAGAAGAAGATGATGACGATGAAGATTACGTCGCCGCTGTACCATCACCTAGGGTTTCTCAGGAAGGTCCCCGTAATCCTCCCTCTAATGAAGTAATTGTTATCCCCGACGTAGAACCACAGAATTGCGTTGAAGAGGAGGGAAACAAACGCCGTAGAACCGAAGGAGGTGAGGCTTCGTGCTCATGCGTCGCAATTGGGACCGCCGAAGGCAGTCAAGGGAACGAGTGCAACACTGACAACCTTATTTGCCCTATTTGTATGGACGTTTGGACCAATAAAGGCGAACATAACATCTGTTGTCTTCCTTGTGGACACATATATGGCATGTCTTGCATCAAGAGATGGCTTCAACAGCGGAAAAATTCGGGGAAGTGTCCTCAATGTAATAGGAAATGCTCGTTGAAGGATGTGAGGAAACTCTATGCTTCTAGAGTAGTTTCCGTCGATGAAGAATCTCAGAAGAGAATTAAGTCACTCGAGGTCAAATGTGCTGACCTTGAAAGAAAGGATGGTGATTGGCGCAAGAAAGAAGCTGAATGGCAGAATAGAGAAGCTGCATTGCGTCATAAAGTTCAGAAACTTACAGAGAGAAACACTTATTTGGAGCAGCTGCAACTAGATATGCAGAGCAGACAATCTGGATTGATAAATGGCAATGTGAGCTCTCAATGGAGATATGAATCTGAGCGCAACTGTGGCTCAAAGTTCCATGGAAAAGGATCTTTTTGCAATTTTGAATTTCAGAGAGCGTTTCATCTAGATGGTGCACGTGCATTTGATATGGAACCTTCTAATAATATTTTATTAGTTGCACAAAAGCCAAAAGGGATAGGTGGAGCACCCTTGCTAACTAAAATGAGCTTGATATGTCCATTTGAGATGGAAGATATCTTACTGCCTTCCACTTCATATGGTATTAGAGACCTACATATTTCTCCTTCCGGTAGTCTGGCTCTCTATGCTTCATTAGGGAAGAAATTATCAGTGCTCAGCTTGGACAGTAACAACCTCGTTGTCAATTATAATCTACAGAATTCTATTCCAGGCTCCTGCTTGGTCGTGTTCATGGGATCTCAACAGTACACATTACATATATGCCGGACTACAGGTCAGCACATTGCTTTTTTATATTTAATGGGTGTAGGAAATTCAAATGCTAATCTTCATATAACTTTCCTGCAGGATGGTTCTGTCTTGGTGTTTGATATGCGCCAAACTGCAGGACCCATGGAAACTTTAGTTGGGTTGACTAACAACCCTGTCCATACTGTACAATCTCTGGCACAAACTTCAAGTCTTTCTTCTGGTGGTAGAACCATCCTATCTGCATCTGCAATTGGCCTTTGTCAGTGGAGCATTGATTCTCAAGAACGGCCATTTGTGGTTCCTGAAAGTGATAATCAAGGAGTTTGTATATCCGTTGCTTATTGCCCTAGCAGTGATGAGATTGTTGTTTCATACCGGCCGAAGTTTGATAATTCGGTGGATATGCCTCTTACTCTATCGCCCAGTCCTAATGGTATTGGACAAGGAGTACAGGGCTCTCATGTCTTGTTCAAGAGAATGGGCAATCACCATTTCCAAAAGGTGGGTTCCTCGTATGCCAATGTAAGTAAAATTCGGCTACCAAAGTCTATAATTATAGACATGGAGAATCAGAGTAGATTGTTTGTATCTGGAGATGAAATGACATCTGATTTGGTTTTGCACGAGTTGCCATCGTTTAGAGTTATTCAGCAATTCAAAATGCCAGCTCAGGCCCGTGATATTAGGTATTCACCTAGCCATGGGATACTTGGTTGTTTAAGTGAAAACACGCTGCAACTTTTCGATGCCAATCTCTCGTGA 1992 0.4312 MASPFNVHDFDENLYAAVEEFLGDAAGYGVTEDEEDDDDEDEEEDEEEEEDDDDEDYVAAVPSPRVSQEGPRNPPSNEVIVIPDVEPQNCVEEEGNKRRRTEGGEASCSCVAIGTAEGSQGNECNTDNLICPICMDVWTNKGEHNICCLPCGHIYGMSCIKRWLQQRKNSGKCPQCNRKCSLKDVRKLYASRVVSVDEESQKRIKSLEVKCADLERKDGDWRKKEAEWQNREAALRHKVQKLTERNTYLEQLQLDMQSRQSGLINGNVSSQWRYESERNCGSKFHGKGSFCNFEFQRAFHLDGARAFDMEPSNNILLVAQKPKGIGGAPLLTKMSLICPFEMEDILLPSTSYGIRDLHISPSGSLALYASLGKKLSVLSLDSNNLVVNYNLQNSIPGSCLVVFMGSQQYTLHICRTTGQHIAFLYLMGVGNSNANLHITFLQDGSVLVFDMRQTAGPMETLVGLTNNPVHTVQSLAQTSSLSSGGRTILSASAIGLCQWSIDSQERPFVVPESDNQGVCISVAYCPSSDEIVVSYRPKFDNSVDMPLTLSPSPNGIGQGVQGSHVLFKRMGNHHFQKVGSSYANVSKIRLPKSIIIDMENQSRLFVSGDEMTSDLVLHELPSFRVIQQFKMPAQARDIRYSPSHGILGCLSENTLQLFDANLS. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05058 663 Gene3D - 298 558 IPR015943 GO:0005515
Seca1g05058 663 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 248 IPR013083 -
Seca1g05058 663 SUPERFAMILY Tricorn protease domain 2 347 661 - -
Seca1g05058 663 MobiDBLite consensus disorder prediction 29 57 - -
Seca1g05058 663 PANTHER RFWD3 PROTEIN 33 661 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Seca1g05058 663 MobiDBLite consensus disorder prediction 24 80 - -
Seca1g05058 663 SMART ring_2 131 176 IPR001841 -
Seca1g05058 663 CDD mRING-C3HGC3_RFWD3 127 189 - -
Seca1g05058 663 Coils Coil 197 217 - -
Seca1g05058 663 Pfam Ring finger domain 131 177 IPR001841 -
Seca1g05058 663 Coils Coil 225 245 - -
Seca1g05058 663 ProSiteProfiles Zinc finger RING-type profile. 131 177 IPR001841 -
Seca1g05058 663 SUPERFAMILY RING/U-box 125 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05058 Seca-Chr1 153355779 153361090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05058 128 263 C3H Transcription Factor Family AT4G01270 29.371 9.62e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05058 K15691 - gmx:100818898 671.003