Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05052 ATGGAGGAGCCATATGTTGCTGAAGATGGTTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTAAGCAGACACAATGTGTCACCGGGGACAAAGCTTAAACTCTCACATTTTGAGAAGACTCCAAACCATTCTTTACATTTTGCAACTCAGGAGTGGAAATCATGA 168 0.4226 MEEPYVAEDGFTYEYRAIKAWLSRHNVSPGTKLKLSHFEKTPNHSLHFATQEWKS. 56
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05052 55 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 55 IPR013083 -
Seca1g05052 55 Pfam U-box domain 1 54 IPR003613 GO:0004842|GO:0016567
Seca1g05052 55 ProSiteProfiles U-box domain profile. 1 55 IPR003613 GO:0004842|GO:0016567
Seca1g05052 55 PANTHER WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 1 54 - -
Seca1g05052 55 SUPERFAMILY RING/U-box 1 54 - -
Seca1g05052 55 SMART Ubox_2 1 53 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05052 Seca-Chr1 153217663 153217830 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05052 1 55 U-box Gene Family AT2G19410 61.818 2.94e-20 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05052 - - lja:Lj4g3v2172820.1 92.8189