Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05044 ATGGCGGTTGCTGAGAATGTTGGGGCAAAAATCGGTTCTTCGAGTCAAAATTTGGACACCAGTGTAGTGTCATCGGACTCAAGTGAGGTTGAGAAATCGAAAACCGATCAGAATCTGAATAACGGTGTGTTCAACCATCAACACCAAGATAGAGTTCCGAGTAATTTATCAGTTCCTAATGGTAATTACAACTACAAGGCTCAAGTGGGTCAGATGAACACAAATGGGGTCCAAAACCAACAGTTGGTGCTGAACAATGATGGATATGAGATGGATGGGATCAGAAATGGGGAGAATGAAAGTGAGGGTTTCAAGGGTGATATGAGGGAATTGGAAGAACTGTTGTCAAAGCTGAATCCCATGGCTGAGGAATTTGTGCCCCCCTCACTAACAAATAATCATGGCTATTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATACTTCACAGTAATTATGGCAATGCTAATGGACAGACTAACAGAAGGAGGAAGAATGGCTATGCTTCTGGGAAGCGTAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCAGAGGACTGTTTATGTGTCTGATATTGATCAACTGGTTACTGAAGAGCAGTTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTGTGTGGGGATCCCAATTCTATTCTTCGGTTCGCATTCATTGAGTTTACAGATGAAGAAAGTGCAAGGGCTGCTCTGAACCTGTCTGGAACGATGCTTGGATACTATCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCAACATATTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTGAAAAACTTCTTTGAATCTATCTGTGGCGAGGTTCAACGGTTGAGGCTTCTTGGGGATTACCATCATTCAACTCGAATTGCTTTTGTTGAATTCAAAATGGTTTTCTTTGCTTCATTCTTTCAGGCTGAGAGTGCAATTGCAGCTCTGAGCTGCAGTGGTGTGATTTTGGGTACACTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTCCGTTCCCGTGCTCCTCGCACTTCTATGCACTGA 1161 0.4272 MAVAENVGAKIGSSSQNLDTSVVSSDSSEVEKSKTDQNLNNGVFNHQHQDRVPSNLSVPNGNYNYKAQVGQMNTNGVQNQQLVLNNDGYEMDGIRNGENESEGFKGDMRELEELLSKLNPMAEEFVPPSLTNNHGYLAGPNAGFGYTNNFILHSNYGNANGQTNRRRKNGYASGKRRVNHKMDMEKREEMIQRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDKKLTQADVKNFFESICGEVQRLRLLGDYHHSTRIAFVEFKMVFFASFFQAESAIAALSCSGVILGTLPIRVSPSKTPVRSRAPRTSMH. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05044 386 CDD RRM2_CID8_like 286 375 IPR034825 -
Seca1g05044 386 MobiDBLite consensus disorder prediction 1 52 - -
Seca1g05044 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 338 IPR000504 GO:0003723
Seca1g05044 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 258 IPR000504 GO:0003723
Seca1g05044 386 FunFam Polyadenylate-binding protein-interacting protein 11 156 270 - -
Seca1g05044 386 MobiDBLite consensus disorder prediction 9 52 - -
Seca1g05044 386 CDD RRM1_CID8_like 191 270 IPR034823 -
Seca1g05044 386 SUPERFAMILY RNA-binding domain, RBD 193 338 IPR035979 GO:0003676
Seca1g05044 386 SMART rrm1_1 291 370 IPR000504 GO:0003723
Seca1g05044 386 SMART rrm1_1 194 264 IPR000504 GO:0003723
Seca1g05044 386 FunFam Polyadenylate-binding protein-interacting protein 10 284 370 - -
Seca1g05044 386 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 113 379 - -
Seca1g05044 386 Coils Coil 94 114 - -
Seca1g05044 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 268 IPR000504 GO:0003723
Seca1g05044 386 Pfam Ataxin-2 C-terminal region 115 129 IPR009818 -
Seca1g05044 386 Gene3D - 153 270 IPR012677 -
Seca1g05044 386 Gene3D - 275 382 IPR012677 -
Seca1g05044 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 374 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05044 Seca-Chr1 153080723 153085898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05044 195 362 Eukaryotic Initiation Factors Gene Family AT1G34140 24.419 1.31e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05044 - - gmx:106794116 620.928