Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05043 ATGAAGTGTTTTTCATTCTACTATGGAGAGAAGAAAGATGAACCAAAAGGCTTTCAATCAGCATCTGGTCGGTCAGAGAGTTCCACATATGTTGAGGCTGAGGATGTCTCAGACAATGGCAGCTCAGAATCCCTCAGGAGGAATTCAATTCCTAATTTGTCCCAGAGACCTAGCAACCTTAGAGTGTTCACTGTATCTGAACTGAAATCTGCCACAAAGAATTTCAGCCGTTCTGTTATGATTGGAGAGGGTGGGTTTGGGTGTGTCTACCTAGGATTAATAAGAAGTGTAGAGGACCCTTCCAGAAGAATTGAAGTTGCAGTTAAACAACTTAGTAAAAGAGGAATGCAGGTAAAGGTTTGCCTGCTGTTTTTTCTTCTTGAAAAATTATTTGCTTCTGCAATATCAGGAGGTATCTATGGGCATAAGGAATGGGTGACAGAAGTGAATGTTTTGGGCATTGTTGAGCATCCCAATCTTGTGAAACTAGTTGGCTACTGTGCTGATGATGATGAAAGGGGAATCCAGCGCCTTCTGATTTATGAATACATGCCAAACAGAAGTGTGGAACACCATTTATCTCACCGATCAGGGACTCCTCTCCCATGGAGTAGGAGATTAAAAATAGCCCAAGATGCAGCTCGTGGATTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGACTTTAAATCTTCAAACATCCTTTTGGATGAACAGTGGAATGCAAAGCTATCAGACTTTGGGTTAGCAAGATTGGGACCATCAGATGGACTAACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGATATGCAGCTCCTGAATATGTTCAAACTGGACGTCTCACATCAAAGAATGATGTCTGGAGCTATGGTGTGTTTCTTTATGAACTCATTACTGGCAGGCGCCCTTTAGATCGAAACCGGCCTAAGGGTGAGCAGAAACTGTTGGAATGGATAAGGCCATACCTATCAGATGCAAAGAAATTTCAGCTGATATTGGATCCAAGACTTGATAAGAAACAAGTTAACAAGTCAGCCCAGAGACTTGCTATGATAGCTAATAGGTGCTTGGTAAAAAATCCAAAGAATCGCCCAAAGATGAGTGAGGTATTGGAAATGGTGAATGGAATGGTAGAATCTTCATCAGGTGCTAGTCCACAGTTACCCTTGAAGAGTGTGGCAAAAGTGGAAGCTTCCCATGACACTGAAATAAACAAGAAGAAACGGACCATGGATCAAAAGCCTGGAGAAAGTAATTGGTTTGTTAGGATGTGGAGACCAAAGCTTGTAAGAACATGTTAA 1317 0.4169 MKCFSFYYGEKKDEPKGFQSASGRSESSTYVEAEDVSDNGSSESLRRNSIPNLSQRPSNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYLGLIRSVEDPSRRIEVAVKQLSKRGMQVKVCLLFFLLEKLFASAISGGIYGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRSGTPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPKGEQKLLEWIRPYLSDAKKFQLILDPRLDKKQVNKSAQRLAMIANRCLVKNPKNRPKMSEVLEMVNGMVESSSGASPQLPLKSVAKVEASHDTEINKKKRTMDQKPGESNWFVRMWRPKLVRTC. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05043 438 FunFam Serine/threonine-protein kinase PCRK2 184 392 - -
Seca1g05043 438 ProSiteProfiles Protein kinase domain profile. 75 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05043 438 MobiDBLite consensus disorder prediction 12 53 - -
Seca1g05043 438 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Seca1g05043 438 Gene3D Phosphorylase Kinase; domain 1 47 183 - -
Seca1g05043 438 Gene3D Transferase(Phosphotransferase) domain 1 184 397 - -
Seca1g05043 438 MobiDBLite consensus disorder prediction 20 53 - -
Seca1g05043 438 Pfam Protein kinase domain 77 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05043 438 SUPERFAMILY Protein kinase-like (PK-like) 50 379 IPR011009 -
Seca1g05043 438 CDD STKc_IRAK 81 382 - -
Seca1g05043 438 PANTHER OS01G0588500 PROTEIN-RELATED 42 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05043 Seca-Chr1 153065316 153068013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05043 1 394 Glycoside Hydrolase AT3G07070 39.506 4.76e-88 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca1g05043 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05043 - - gmx:100813060 750.74