Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05035 ATGAAGGGTGGGACTCTTGTTACAGATGATGCTGGTGGGGATTCCTATTCTAGGCGTAGCAAGGAATTGACTGAAGGATATAGAGACAATGCACAAGCCAATCCTCATAGGAAAGATAAAAAAGGTGACAGGAAAGGCGTATGTTACGATTGCTCGAGTGGCGGAATACTCTTGCGCTGCTGTGGAAAAGGATGTCAAGGGAAGTACCATCCCTCCTGTGTGGATCCTCCTCTTAATTATATTCCTCCTGGGTTTTGGCATTGTATTTGGTGTGTTAAGAAAAAGATAGAGTTTGGTTTGCATTCTGTTTCTGAAGGGGTGGAATCCATCTTGGATTCCAGAGAAGTGATTTCAGAAACTGAAGTGATACAAAGAGAGTACTTTGTCAAGTATCAGGGCCTTGCTCATGCTCACAACCGCTGGATTCCAGAAAGAAAAATACTTCTTGAGGCCCCAAAGCTTTTGGCAAAGTTTAAGAAGAAACTGCAGGTTGTAAGGTGGAAAAGAGATTGGACTATACCTCACCGCTTGCTTCTAAAAAGGGCAATTGTATTACCAAAGCAAAATGATCAACATTTTGGTGGGCATGAAGACAGTGGTTTCATTTACCGTTATGAGTGGCTTGTAAAATGGAATGGCCTTGGTTATGATCATGTTACATGGGAGTTAGATGATGCTTCATTTATGACGTCATCTGAAGGCATGAAACTCATAGACGATTATGGAAGTCGTCGGAAGAGAGCAGTTAGACTGTCAAATTCTTTTGAAGCCAATGGGAGAAAGGCATCATTTACTGAATTATCAGTGCTACCATTTGGAGATTCACCAGGATTTTATGACCAGCATTTGTGTTATGTGAACAAGCTTTGCATGTGTTGGCACAAAAGTCAGAGTGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGGGTTATGAAGGTGATTTTGTTTATATTATCTTTGAATTGTAATGTGAAGAAGCCTTTTCTCATCATCTCAACTTGTACTGGCCTCTCTGTTTGGGAAACAGAATTCTCACATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAAACAAAGATGTACGCAGTGGCATCAGGGCATTAGAGTTTTCTAATGAACATGGTGGCGTCTTATTTCAAATATTATTATCATCTTATGATATTTTTGTTGAGGACATACATGCACTAAGATGCATTCCATGGGAAGCGATTATAATTGATGAATGCCAGCGATCTAGAATTTTAGGACACTTTGAAAATTTTAAGACTCTAGCAGCTGAGATGAGGCTCCTTATCGTTAGTGGACAAATCAAGGAAGATCGAGCTGATTATATCAAATTGCTTTCATTCCTTAAGTCAGGACATCATGAGTTAAATATGTCTCAAATGGAGACTTTCTTCAGTGCTAGCATTTCCAATTTGAAGAGCCAATTAGAACAATATGTTGCATTTAAATGCAATTCAAGCTCCACTAGGTTTGTAGAGTATTGGGTTCCTGCCCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTCAATGCTGTTATGCTCAGGCCAAAAGTTTGACTCAGTTGATGCCCTCCGTGAACTTATTATCTCAACAAGGAAGTGCTGTGACCACCCTTATCTCCTAGATCAGTCACTGCATAATTTTATCACTGGAGGTCTACCTGTTGAAGAGCATTTAAATATTGGAATAAAAGCAAGTGGAAAACTGCTACTTCTTGAAAAAATCCTTTTTGAAGTAAGAAGATGTGGGTTAAGAGTGATAATATTATTTCAGTCAAGTGGTGGTTCTGGATCAATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTACGATATGGTAGAGGTTATATCCCATCAAAGAAGCAAGCTGCATTGGACACATTTAATGACAAAGAAAGTGGAAAATTTGTCTTTTTGTTGGAAAACCGAGCTTGTGTCCCTAGCATTAAGCTTTCATCAGTGGATATTATTATATTATTCGACAGTGATTGGGACCCACAAAATGACCTAAGATGCTTACAAAAGATGTCTATCAGCTCACAGTTCAAACAGTTAACAGTTTTAAGATTGTACTCATACTTCACAGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGGGTATAACTCTTGACGGCAATATGCAGTCAATTAACCTGAATACATGTCACACCCTGTTAAAATGGGGTGCCTCCTATCTGTTCAATAAGCTTGATGACTTACATGGCAGTGGCACCTCAGTTTCTGCTCTAGATATCTCTTCTGATCAGTCACTTCTAAGTGATGTAATCTGCGAATTATCATCCAAATTGGTTTGTTGTGCTGGTGATACTGATTGTCATGGATCTTCATTTATATCTAGAGCAAAGCAGAATGGAGGGGAATATGCAAGGAACATTTTATTACTAGGAGAAAGAGAAATGAAGAAATTGGGCAATGAGCCACATGCTTTTTCCTGGAGCGATCTCCTCAAAGAAAGGTATCCTCAATGGAAGTTTTTATCTGTTTCATCTCAGAGGATCAGGAAAACAGTCAAACATTTTGGTCACATACTAAAAGAATCTGAATGTGAAATTGATGCCATTTTAAGAGAGAGGATGTCCAAGGATAATGTGGATCCCAAGAGGAGAAAAGTGTCCAAGGATAATGTTGATCCCAAGGGGAGGAAAGTGACCGTGGATAATGTTGATCCCAACAGGAAAGTTTCCAAGGATACTGTTGATACAAAGGGAACGAAATTGTTAAAGGATGTAGTTGATCCTAAGATTAGGAAGGTGACCAAGGATATTATTGATGCGAAGAGGAGGGAAGTGTCCAACGATATTGTTAATTCCAAGAGCAAGAAAGTGTTCAAGGATATTGTTGATTCCAAATATCGAAAAACAAAGACGAAGAACAAGAAGAATCTATGTGCTAGCAATAGGGCAAGCAAATTGAATGGTAGTAGGATTGGTTTTTCTAAGGCGGCACTTGATTCCATAGTGCATCCTTTGACCAATGAAATCACAGGAGCTGCTGCAATAGACATACAATTTTTAGAACAAAAGAAACTGCCTGACATGCCAAAGCCCGATATATCAGGTCTCTGTGATGTTCTACATTTTTCGAAAAACATCGAGGCTGTCGCCATGAGGATTCTTGAGCATATATTTAAACATTACAATGTTAATTGCCTAGAAGTTTCTACCATGCAGGCATTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAGCATGAGATTGATAGGAAAGATTCACTTCATCTTGCAAAACTGTACTTGAATTTTTATTGCAATGAGGAAGAAGTCACTGATGTCTTCTCTGAACTGTGGAAGCATAAGAAAGATTTTTCAAGTTGTTTACAAAATGGACTTTATGCTGAGAAATGTAACATAAATAGTGCTTCAGACTCCATGACACCTGAGCTGAAAGATTTGGCAGAGGAGGAGAAGCAGAAGGGTTTTCAGGGTCCTCATGTTTTAAATCTTGTGAAATCTGCCACAAATGAACAAGATCTTCGAAGAAAGTCTCCCACAGCGGTGCTATCTTCACAAGACCAGACTTGTAGAGAAACATTTCATAGTGGACCTTCCACAGCTCATGAAATTTGTCCATCTCAGAAGACACCTGATAGTTTGCCTGTGGAAGCTGATGCTATCTCTGTGGAATCTGATGCAGATGAGGGATTAGATGCTATGACCTCAGTAAAAGAAGTTTCATTCCATGAACACTGGAATGAAGTCCCTAATTCATGTAATGATCCTAATAATGTCAACCATGTCACAGGTTCTTTGGAAAGACAGAGTCCTGTTATAGGTACAGAGATTGCACAATCTGATGGCAAAGTTTATGAAGATCCTCAAATTTTAATGAATGAAGTGATTGCTATTGATAATTCTCTAAGTATGTCAACTCATCCTGTGCATCATAATAGTGATGAGACAGATGCTGTAACTTGCGATAGTACTGCTGTTCCTGAGGTCAGACAGTGGTACAATATAGTGAGCCCTGTATTTGGTGAGTCGACTACTTTGGAGTTTGCTGAGACTACCTTACCACCATGTATGCAACCATCAGATGAAAATTTGTTGCCATTGCCTCAGATGTCTATGTCCTCCGTTCCATCTTTTTTGGAGGACAATTTACCTAGTACAGTCATGCCTCTAGATGATTCTTTTTATCATAGTGGTGGAGATCATTGTTACATTCACGAGGCTGAAGTAATATTGCAAGAACCGTTTGACCCAATGGAACCAGTTAACTCTTCCTTTGTTTCACCTGTGACACTGCAACCCATTAGTGTGCCCCAGCCCATCGATGAAAATATCACACATTTTCCTCATGGCATTACTAATCCTGGATATATGGACAGTGATACTTTTCAAGCTCACTCTCTGACATCTGAAATGCCCCGCTTTGCATACCCAGATCCATTGCTAATTGAAATGGAGAGAATAGAAAAGATGAATGAAGAAGCCTTCAATATACACGAGAAAAAAATTTTGCAGCTCCAATCTGACTACAAAAAGGAGTTTGAAGAGTTAGGTGAAAAGTACAGAATGTTGCTTCAGAATGTCAATACCGCAGTAGAACTGAAGAGGAGGGAACTTGAGACACAATGTAAATTAGTTCTCATGAATAAAGTATTAGCTGAGCACTGGATCCAAAAGCTTGATGGTTGCAAAAGATCTGCAGAACAATACACAGAACAAGTGGCAATGCCTAGCTGCTCAAGTTCTCATGTATCAAGGCACCATACCTCACATATACCTGCTCAAAGATGTGAACAATTTACGGAACATCCACCCATAATTCAGCCATCCTTGTCCATCCCCACGGTGGTGGTTAATCCTGCAACAACTCAAAATACTATATCAGCTATTGCCTCCGAATTAATCCAATCGCAACATCAGTGA 4974 0.3938 MKGGTLVTDDAGGDSYSRRSKELTEGYRDNAQANPHRKDKKGDRKGVCYDCSSGGILLRCCGKGCQGKYHPSCVDPPLNYIPPGFWHCIWCVKKKIEFGLHSVSEGVESILDSREVISETEVIQREYFVKYQGLAHAHNRWIPERKILLEAPKLLAKFKKKLQVVRWKRDWTIPHRLLLKRAIVLPKQNDQHFGGHEDSGFIYRYEWLVKWNGLGYDHVTWELDDASFMTSSEGMKLIDDYGSRRKRAVRLSNSFEANGRKASFTELSVLPFGDSPGFYDQHLCYVNKLCMCWHKSQSALIVDDQIDQERVMKVILFILSLNCNVKKPFLIISTCTGLSVWETEFSHLAPSANLVVYKGNKDVRSGIRALEFSNEHGGVLFQILLSSYDIFVEDIHALRCIPWEAIIIDECQRSRILGHFENFKTLAAEMRLLIVSGQIKEDRADYIKLLSFLKSGHHELNMSQMETFFSASISNLKSQLEQYVAFKCNSSSTRFVEYWVPAQLSSLQLEQYCSMLLSNSMLLCSGQKFDSVDALRELIISTRKCCDHPYLLDQSLHNFITGGLPVEEHLNIGIKASGKLLLLEKILFEVRRCGLRVIILFQSSGGSGSIGDILDDVLCQRFGKDCYVRYGRGYIPSKKQAALDTFNDKESGKFVFLLENRACVPSIKLSSVDIIILFDSDWDPQNDLRCLQKMSISSQFKQLTVLRLYSYFTVEEKVLMLAKEGITLDGNMQSINLNTCHTLLKWGASYLFNKLDDLHGSGTSVSALDISSDQSLLSDVICELSSKLVCCAGDTDCHGSSFISRAKQNGGEYARNILLLGEREMKKLGNEPHAFSWSDLLKERYPQWKFLSVSSQRIRKTVKHFGHILKESECEIDAILRERMSKDNVDPKRRKVSKDNVDPKGRKVTVDNVDPNRKVSKDTVDTKGTKLLKDVVDPKIRKVTKDIIDAKRREVSNDIVNSKSKKVFKDIVDSKYRKTKTKNKKNLCASNRASKLNGSRIGFSKAALDSIVHPLTNEITGAAAIDIQFLEQKKLPDMPKPDISGLCDVLHFSKNIEAVAMRILEHIFKHYNVNCLEVSTMQAFEISVCWLAASLLKHEIDRKDSLHLAKLYLNFYCNEEEVTDVFSELWKHKKDFSSCLQNGLYAEKCNINSASDSMTPELKDLAEEEKQKGFQGPHVLNLVKSATNEQDLRRKSPTAVLSSQDQTCRETFHSGPSTAHEICPSQKTPDSLPVEADAISVESDADEGLDAMTSVKEVSFHEHWNEVPNSCNDPNNVNHVTGSLERQSPVIGTEIAQSDGKVYEDPQILMNEVIAIDNSLSMSTHPVHHNSDETDAVTCDSTAVPEVRQWYNIVSPVFGESTTLEFAETTLPPCMQPSDENLLPLPQMSMSSVPSFLEDNLPSTVMPLDDSFYHSGGDHCYIHEAEVILQEPFDPMEPVNSSFVSPVTLQPISVPQPIDENITHFPHGITNPGYMDSDTFQAHSLTSEMPRFAYPDPLLIEMERIEKMNEEAFNIHEKKILQLQSDYKKEFEELGEKYRMLLQNVNTAVELKRRELETQCKLVLMNKVLAEHWIQKLDGCKRSAEQYTEQVAMPSCSSSHVSRHHTSHIPAQRCEQFTEHPPIIQPSLSIPTVVVNPATTQNTISAIASELIQSQHQ. 1658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05035 1657 Gene3D - 281 493 IPR038718 -
Seca1g05035 1657 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 31 1581 - -
Seca1g05035 1657 SUPERFAMILY Chromo domain-like 170 243 IPR016197 -
Seca1g05035 1657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 752 IPR027417 -
Seca1g05035 1657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 458 IPR027417 -
Seca1g05035 1657 Gene3D - 165 244 - -
Seca1g05035 1657 Pfam Chromo (CHRromatin Organisation MOdifier) domain 107 161 IPR023780 -
Seca1g05035 1657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 99 IPR013083 -
Seca1g05035 1657 ProSiteProfiles Zinc finger PHD-type profile. 45 94 IPR019787 -
Seca1g05035 1657 SMART chromo_7 170 246 IPR000953 -
Seca1g05035 1657 SMART chromo_7 104 163 IPR000953 -
Seca1g05035 1657 Pfam SNF2-related domain 310 551 IPR000330 GO:0005524|GO:0140658
Seca1g05035 1657 Gene3D - 494 729 IPR027417 -
Seca1g05035 1657 MobiDBLite consensus disorder prediction 14 45 - -
Seca1g05035 1657 MobiDBLite consensus disorder prediction 1212 1231 - -
Seca1g05035 1657 Gene3D - 1494 1576 - -
Seca1g05035 1657 SMART PHD_3 47 92 IPR001965 -
Seca1g05035 1657 MobiDBLite consensus disorder prediction 888 907 - -
Seca1g05035 1657 Gene3D - 106 164 - -
Seca1g05035 1657 ProSiteProfiles Chromo and chromo shadow domain profile. 105 170 IPR000953 -
Seca1g05035 1657 ProSitePatterns Zinc finger PHD-type signature. 48 91 IPR019786 -
Seca1g05035 1657 MobiDBLite consensus disorder prediction 1 45 - -
Seca1g05035 1657 SUPERFAMILY Chromo domain-like 65 162 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05035 Seca-Chr1 152987812 153004575 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca1g05035 SNF2_N 8.1e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05035 - K11643 gmx:100813574 1875.14