Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05034 ATGGAGGCAACTATTGTAAGCAACGGTCACCACCAAAGCCAAAACGATTCGTTTTGCTTGACTAGCAATGCTACTATTACTAAAGACAGTAGTGACCCATTGAATTGGGGTCTGGCGGCGGAGTCAATGAAGGGAAGCCACTTGGATGAGGTGAAGCGCATGGTGGAGGAGTACCGTAAGCCGGTGGTGCGCCTCGGCGGCGAGACTCTGACGATCGCGCAGGTGGCAGCCATCGCCGGTCACGACCAAGGCGTGATGGTGGAACTGTCTGAGTCAGCAAGAGCTGGCGTTAAGGCGAGTAGCGATTGGGTGATGGAAAGCATGAATAAAGGCACTGACAGTTATGGAGTCACCACTGGCTTCGGTGCCACCTCTCACCGCCGAACCAAACAAGGTGGTGCTTTGCAAAAAGAGCTTATCAGGTTTTTGAATGCTGGAATATTTGGTAATGGTACCGAGTCATGCCATACATTGCCACACTCTGCAACCAGAGCAGCCATGTTAGTGAGAATTAACACTCTTCTCCAAGGGTACTCAGGAATTAGATTTGAAATCTTAGAAGCCATTACCAAGCTCATAAATAACAATGTTACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCAGGAGATCTAGTCCCTCTTTCTTACATTGCTGGTTTGCTTACTGGCCGACCTAACTCCAAAGCTGTTGGACCCTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCCAATTGGCTGGCATCAACTCTGACTTCTTTGAATTACAACCCAAGGAAGGTCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCCGCCTTAGCTTCTATTGTTCTATTTGAGGCAAACATACTAGTTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCTGAAGTGATGCAAGGGAAACCTGAATTTACTGACCATCTGACACATAAGTTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCAGCCAAGAAGTTGCACGAGATAGATCCTCTGCAGAAGCCAAAACAAGATCGATATGCACTTAGAACTTCGCCACAATGGCTTGGTCCTCTAATTGAAGTGATTCGATTCTCAACCAAGTCAATTGAGAGGGAGATAAACTCTGTGAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCACTGCACGGTGGTAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACACGTTTGGCTCTTGCATCAATTGGCAAACTCATGTTTGCTCAATTCTCAGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCTAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTATTGCTCTGAACTCCAATATCTTGCAAATCCAGTCACAAGTCATGTTCAAAGTGCTGAACAACATAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAGACAAACGAAGCCATTGAGATCCTTAAGCTCATGTCTTCCACGTTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAACTCGGTCAAAAACATTGTAAGCCAGGTTGCTAAGAGGACTCTTACCACAGGTTTCAATGGAGAACTCCATCCTTCTAGGTTTTGTGAAAAGGATTTGCTGAAAGTGGTTGACAGGGAGTATGTATTTGCCTATATCGATGACCCCTGCAGTGCTACATACCCACTAATGCAAAAACTCAGGCAAGTGCTTGTGGATCATGCATTAGTTAATGGAGAAAATGAGAAGAATTTGAACACGTCAATCTTTCAAAAGATTTCAACTTTCGAGGAAGAGTTGAAGACTCTTTTGCCAAAGGAGGTGGAAAGTGCAAGGGTTGCATATGAGAGTGGCAATTCATCAATTCCAAACAAGATCAAAGAATGTCGATCTTATCCACTGTACAAGTTTGTGAGGGAGGAGTTGGGAACAGGGTTACTAACCGGAGAAAAGGTTAGGTCACCAGGTGAGGAGTTTGATAAACTGTTCACAGCAATGTGCCAGGGTAAAATTATTGATCCTCTTCTACAATGCCTTGGGGAGTGGAATGGTGCTCCTCTTCCAATTTGTTAA 2172 0.4424 MEATIVSNGHHQSQNDSFCLTSNATITKDSSDPLNWGLAAESMKGSHLDEVKRMVEEYRKPVVRLGGETLTIAQVAAIAGHDQGVMVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFQLAGINSDFFELQPKEGLALVNGTAVGSALASIVLFEANILVVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNSVKNIVSQVAKRTLTTGFNGELHPSRFCEKDLLKVVDREYVFAYIDDPCSATYPLMQKLRQVLVDHALVNGENEKNLNTSIFQKISTFEEELKTLLPKEVESARVAYESGNSSIPNKIKECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLLQCLGEWNGAPLPIC. 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05034 723 FunFam Phenylalanine ammonia-lyase 23 269 - -
Seca1g05034 723 Gene3D - 23 269 IPR024083 -
Seca1g05034 723 FunFam Phenylalanine ammonia-lyase 536 657 - -
Seca1g05034 723 PANTHER HISTIDINE AMMONIA-LYASE 28 723 IPR001106 -
Seca1g05034 723 SUPERFAMILY L-aspartase-like 32 723 IPR008948 GO:0003824
Seca1g05034 723 Pfam Aromatic amino acid lyase 70 548 IPR001106 -
Seca1g05034 723 NCBIfam phenylalanine ammonia-lyase 32 712 IPR005922 GO:0005737|GO:0006559|GO:0016841
Seca1g05034 723 FunFam Phenylalanine ammonia-lyase 270 580 - -
Seca1g05034 723 Gene3D Fumarase/aspartase (Central domain) 270 718 - -
Seca1g05034 723 CDD PAL-HAL 68 533 IPR001106 -
Seca1g05034 723 Gene3D - 536 657 IPR023144 -
Seca1g05034 723 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 205 221 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05034 Seca-Chr1 152982262 152985644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05034 21 723 Monolignol Biosynthesis Gene Families AT2G37040 83.926 0.0 1252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05034 K10775 - gmx:100811101 1316.6