Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05033 ATGGAGGCAACTATCGTGAGTAACGGTCACCACCAAAGCCAAAACGATTCGTTTTGCTTGACTAGCAATGCTACTACTACTACTAAAGGCAGTAGTGACCCATTGAATTGGGGTCTGGCGGCGGAGTCAATGAAGGGAAGCCACTTGGATGAGGTGAAACGCATGGTGGAGGAGTACCGTAAGCCGGTGGTGCGCCTCGGCGGCGAGACTCTAACGATCGCGCAGGTCGCAGCCATCGCCGGTCACGACCAAGACGTGATGGTGGAACTGTCTGAGTCAGCAAGAGCTGGCGTTAAGGCGAGTAGCGATTGGGTGATGGAAAGCATGAATAAAGGCACTGACAGTTATGGAGTCACCACTGGCTTCGGTGCCACCTCTCACCGCCGAACCAAACAAGGCGGTGCTTTGCAAAAAGAGCTCATCAGGTTTTTGAACGCTGGAATATTTGGTAATGGTACTGAGTCATGTCATACACTGCCACACTCTGCAACCAGAGCAGCCATGTTAGTGAGAATTAACACTCTTCTCCAAGGGTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACCAAGCTCATCAACAACAATGTTACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCGGGAGACTTGGTCCCTCTTTCCTACATTGCTGGTCTGCTTACTGGCCGACCTAACTCTAAAGCTGTTGGACCCTCTGGAGAGGTACTTAATGCTAAGGAAGCTTTCCAATTGGCTGGCATCAACTCTGACTTCTTTGAATTACAACCCAAGGAAGGTCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGCCTTAGCTTCGATTGTTCTGTTTGAGGCAAACATATTAGCCGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAACCTGAATTTACTGACCATTTGACACATAAGTTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCAGCCAAGAAGTTGCACGAGATAGATCCTCTGCAGAAGCCAAAACAAGATCGATATGCACTTAGAACTTCACCGCAATGGCTTGGTCCTCTAATTGAAGTGATTCGATTCTCAACCAAGTCAATTGAGAGGGAGATTAACTCTGTGAACGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCATTGCACGGTGGTAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACACGTTTGGCTCTTGCATCAATTGGTAAACTCATGTTTGCTCAGTTCTCAGAGCTTGTCAATGATTTTTACAATAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCTAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTATTGCTCTGAACTCCAATATCTTGCAAATCCAGTCACAAGTCATGTTCAAAGTGCTGAACAACATAACCAAGATGTGAATTCTTTGGGTTTGATTTCTTCTAGAAAGACAAACGAAGCCATTGAGATCCTTAAGCTCATGTCTTCCACGTTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTAGAGGAGAATTTGAAAAATTCGGTCAAAAACATTGTAAGCCAGGTTGCTAAGAGGACTCTTACCACATGTGTCAATGGAGAACTTCATCCTTCCAGGTTTTGCGAAAAGGATTTGCTGAAAGTGGTTGATAGGGAGTATGTATTTGCCTATATCGATGACCCCTGCAGTGCTACATACCCATTAATGCAAAAACTCAGGCAAGTGCTTGTGGATCATGCATTAGTTAATGGAGAAAATGAGAAAAATTTGAACACGTCAATCTTCCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGACTCTTTTGCCAAAAGAGGTGGAAAATGCAAGGGTTGCATATGAGAATGGCAATTCAGCAATTCCAAACAAAATCAATGAATGCAGATCTTACCCATTGTACAAGTTTGTGAGGGAGGAGTTGGGAACAGGATTGCTAACCGGAGAAAAAGTAAGGTCACCAGGTGAGGAGTTTGACAAACTGTTCACAGCAATGTGCCAGGGTAAAATTATTGATCCTCTTCTGCAATGCCTTGGGGAGTGGAACGGTTCTCCTCTTCCAATTTGTTAA 2175 0.4437 MEATIVSNGHHQSQNDSFCLTSNATTTTKGSSDPLNWGLAAESMKGSHLDEVKRMVEEYRKPVVRLGGETLTIAQVAAIAGHDQDVMVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFQLAGINSDFFELQPKEGLALVNGTAVGSALASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNSVKNIVSQVAKRTLTTCVNGELHPSRFCEKDLLKVVDREYVFAYIDDPCSATYPLMQKLRQVLVDHALVNGENEKNLNTSIFQKIATFEDELKTLLPKEVENARVAYENGNSAIPNKINECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLLQCLGEWNGSPLPIC. 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05033 724 SUPERFAMILY L-aspartase-like 33 724 IPR008948 GO:0003824
Seca1g05033 724 NCBIfam phenylalanine ammonia-lyase 33 713 IPR005922 GO:0005737|GO:0006559|GO:0016841
Seca1g05033 724 Gene3D - 24 270 IPR024083 -
Seca1g05033 724 Pfam Aromatic amino acid lyase 71 549 IPR001106 -
Seca1g05033 724 FunFam Phenylalanine ammonia-lyase 271 581 - -
Seca1g05033 724 Gene3D - 537 658 IPR023144 -
Seca1g05033 724 CDD PAL-HAL 69 534 IPR001106 -
Seca1g05033 724 Gene3D Fumarase/aspartase (Central domain) 271 718 - -
Seca1g05033 724 FunFam Phenylalanine ammonia-lyase 537 658 - -
Seca1g05033 724 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 206 222 IPR022313 GO:0016841
Seca1g05033 724 PANTHER HISTIDINE AMMONIA-LYASE 28 724 IPR001106 -
Seca1g05033 724 FunFam Phenylalanine ammonia-lyase 24 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05033 Seca-Chr1 152972754 152975858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05033 31 724 Monolignol Biosynthesis Gene Families AT2G37040 84.438 0.0 1249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05033 K10775 - gmx:100787902 1314.67