Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05024 ATGCTTTTTCAGGAATTTGCAGAGAAAAAAAGTTGCCATCTAGCTCCAACTGACATGAAGGCGTGTATGGAGTCAAAGGAAGAGAAAATGAAAGAGATGGTGGACAAGTGTTTAGATTCTCAGCTATGGCATGCCTGTGCTGGTGGAATGGTGCAAATGCCAGCGGTGAATGCTAAGGTCTTCTACTTCCCCCAGGGACACGCTGAGCATGCATGTGAACCAGTGGACTTCAGGGCTTACCACAAAATTCCACCTTTTGTTCAATGCAGAGTTGCAGCTATCAAATACATGGCTGATAATGAGACAGATGAGGTGTATGCAAAACTTAGGCTTGTTCCTTTGCTAAGTAACGATGCTGATTTTGAGGATGATGGTGGTGTTGGTGGCATAAACGGCTCTGAAACTAAGGATAAACTCCCTTCTTTTGCAAAAACCTTGACACAATCTGATGCAAACAATGGTGGTGGCTTTTCTGTTCCTAGATACTGTGCAGAAACAATTTTCCCTCGTTTAAACTATTCTGATGACCCTCCAGTTCAAAACATCTTTGCTAAAGATGTTCATGGGGAGATATGGAAATTCAGGCACATTTATAGGGGCACTCCAAGGCGGCATCTTTTAACCACTGGGTGGAGTAGTTTTGTCAATAACAAGAAGCTTGTTGCAGGGGATTCAATTGTGTTTCTGAGAGCAGAAAATGGGGATCTTTGTGTTGGAATTAGAAGGGCTAAAAGGGGAATTGGTGGTGGACCTGACCCTTCATCAGGGTGGAATCCAGCAGGTGGAATTCATTCTGTACCTTATGGAGGGTTTTCAGGCTATTTGGGAGAGGAAGATAACCAACACCTGAGAAATGGTCATGGGAATGGTTTGAGCACAAGTACAACACTGATGGGTAGAGGGAAGGTGAGGGCCCAAGCAGTTATTGAAGCTACAACTCTTGCTGCCAATATGCAACCCTTTGAGGTGGTTTACTATCCTAGAGCAAGTACTCCAGAGTTTTGTGTGAAGTCTTCTTTAGTTAGAGCAGCAATGCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACTGAGGACTCATCAAGGATAAGTTGGTTTATGGGAACTGTTTCTTCTGTTCAGGTTGCTGATCCAAGATGGCCTGACTCTCCATGGAGACTTCTCCAGGTAACATGGGATGAACCAGAGTTACTTCAAAATGTGAAAAGGGTGAGCCCTTGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCATCTTTCCCCATTCACACCACCACGGAAGAAATTGAGATTACCTCAACCACCAGATTTTCCCCTTGAAGGTCACCAAATTCCAGTGCCAATGTTTCCTAGCAGCAACCTTCTTGTTCCTAGCAATCCCTTTGGTCGTTTACTTGAAAGTAGTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTATATCCTTATCGGATCTCCATCTCAATAAACTCCAGTCAGGTCTATTTTCAGCTACTTTCCCACCCTTTGATCACACTCCTACTACACCAATGAGGGCCCCCAATAACAATAACTACTCAGCATTGCAAAAGCCAAGCACTAGTGAGAATAAAGTCTCTTGCTTTCTATCCATGGCAAGTCCTACGACTCAACCTTCAAAGAAACTAGATAGTGATGTGAAGCCACCCCAGTTGGTGCTTTTTGGCCAAACAATTCTCACGGAGCAACAGATCTCTCTGAACAACTCTGCTGACACACACACAGTGTCCAATGGAAATAATGCTGATAATAATAATAAAATGACCAAGTTTTCTGATGGTTCCAAATGCATTGCTCACAAATGCCTCCAAGAAAATGTGACTAGTTTGGAAAAGACAGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTAGGTCGGACTATGGACCTCTCATTGCTTGGGTCCTACGATGAACTGTACAGAAAACTGGCAGATATGTTTGGCATTCAAAAATCTGAGGTGCTAAGTCATGTCCTTTACCGTGATATAACTGGGGCTGTCAAACACATTGGAGATGAAAATTTCAGTGACTTCACTAAAACAGCAAGGAGGTTGACCATTCTAATGGATTCAAGCAATGAAAAAGGAGGAGAGGACTGTAGAGGAAGATAA 2151 0.4342 MLFQEFAEKKSCHLAPTDMKACMESKEEKMKEMVDKCLDSQLWHACAGGMVQMPAVNAKVFYFPQGHAEHACEPVDFRAYHKIPPFVQCRVAAIKYMADNETDEVYAKLRLVPLLSNDADFEDDGGVGGINGSETKDKLPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLNYSDDPPVQNIFAKDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNNKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPDPSSGWNPAGGIHSVPYGGFSGYLGEEDNQHLRNGHGNGLSTSTTLMGRGKVRAQAVIEATTLAANMQPFEVVYYPRASTPEFCVKSSLVRAAMQIRWCPGMRFKMPFETEDSSRISWFMGTVSSVQVADPRWPDSPWRLLQVTWDEPELLQNVKRVSPWLVEIVSNMPTIHLSPFTPPRKKLRLPQPPDFPLEGHQIPVPMFPSSNLLVPSNPFGRLLESSPAGMQGARHAHYGISLSDLHLNKLQSGLFSATFPPFDHTPTTPMRAPNNNNYSALQKPSTSENKVSCFLSMASPTTQPSKKLDSDVKPPQLVLFGQTILTEQQISLNNSADTHTVSNGNNADNNNKMTKFSDGSKCIAHKCLQENVTSLEKTGHCKVFMESEDVGRTMDLSLLGSYDELYRKLADMFGIQKSEVLSHVLYRDITGAVKHIGDENFSDFTKTARRLTILMDSSNEKGGEDCRGR. 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05024 716 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Seca1g05024 716 Gene3D - 140 244 IPR015300 -
Seca1g05024 716 Gene3D - 621 708 - -
Seca1g05024 716 Gene3D - 349 421 - -
Seca1g05024 716 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Seca1g05024 716 SMART B3_2 142 244 IPR003340 GO:0003677
Seca1g05024 716 FunFam Auxin response factor 140 244 - -
Seca1g05024 716 Pfam Auxin response factor 311 393 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca1g05024 716 FunFam Auxin response factor 349 421 - -
Seca1g05024 716 SUPERFAMILY DNA-binding pseudobarrel domain 137 244 IPR015300 -
Seca1g05024 716 ProSiteProfiles PB1 domain profile. 625 708 IPR000270 GO:0005515
Seca1g05024 716 CDD B3_DNA 140 242 IPR003340 GO:0003677
Seca1g05024 716 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 35 703 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05024 Seca-Chr1 152851262 152854373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05024 30 707 B3 DNA Binding Superfamily AT4G30080 58.671 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca1g05024 B3 9.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05024 - - gmx:100791442 1001.89