Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05016 ATGGCAAAAGACATTGAAACCGCTGCACAAGGTGGGTTACCACACAAGGACTACCACGACCCACCGCCAGCACCACTCTTCGACTCCACCGAACTCGGCAAGTGGTCCTTCTACAGAGCTCTCATCGCCGAGTTCGTTGCCACTCTGCTCTTCCTCTACATCACCGTCTTAACCGTCATTGGCTACAAAAGTTACGGCGGCGACGCTTGCAGCGGCGTTGGCATCCTCGGCATCGCTTGGGCCTTCGGCGGCATGATTTTCATCCTCGTCTACTGCACCGCCGGAATCTCTGGTAAAGGGGGTCACATAAACCCTGCGGTGACGTTTGGGTTGTTCTTGGCTCGTAAGGTGTCGTTGATTAGAGCTATAATGTATATGGTGGCTCAGTGTTTGGGTGCTATATGCGGTGTTGGTCTTGTGAAGGCTTTTCAGAGTAGCTATTACAATAGGTACAAAGGTGGTGCCAACATGCTTGCTGATGGCTATAACAAAGGCACTGGTTTAGGTGCTGAGATTATTGGAACCTTTGTTCTTGTCTACACCGTCTTCTCTGCTACCGATCCCAAGCAAGAGAAGAGTACTACTACTTCAATGAATCTACCTGCTCTTTTTGTTTTTGTTTTGTTTTACACACAGGTTTTGGCACCACTTCCAATTGGGTTTGCAGTTTTCATGGTTCACCTTGCCACCATCCCTATCACCGGAACCGGTATCAACCCTGCTAGAAGTCTCGGTGCTGCTGTGATTTTCAATGACGAGAAAGCATGGGATGACCAGTGGATTTTCTGGGTTGGACCTTTCATTGGTGCTGCCATTGCTGCAATTTATCACCAGTATGTGTTGAGAGCTCAAGCGGCGAAGGCTTTGGGTTCTTTCAGAAGCTCCTCAAACCTGTAA 897 0.4905 MAKDIETAAQGGLPHKDYHDPPPAPLFDSTELGKWSFYRALIAEFVATLLFLYITVLTVIGYKSYGGDACSGVGILGIAWAFGGMIFILVYCTAGISGKGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQSSYYNRYKGGANMLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKQEKSTTTSMNLPALFVFVLFYTQVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNDEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAQAAKALGSFRSSSNL. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05016 298 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g05016 298 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g05016 298 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g05016 298 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g05016 298 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g05016 298 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g05016 298 SUPERFAMILY Aquaporin-like 35 283 IPR023271 -
Seca1g05016 298 CDD MIP 39 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g05016 298 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 292 IPR034294 -
Seca1g05016 298 FunFam Probable aquaporin PIP1-2 24 296 - -
Seca1g05016 298 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Seca1g05016 298 Gene3D Glycerol uptake facilitator protein. 24 298 IPR023271 -
Seca1g05016 298 Pfam Major intrinsic protein 32 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05016 Seca-Chr1 152748760 152749914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05016 1 298 Major Intrinsic Protein MIP AT2G37170 74.917 5.78e-159 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05016 K09872 - vvi:100233002 471.47