Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05014 ATGAAGATTCTCTGTTCTTTTTCTAGTTGTTTCTCAGCCTCGGTTGAAGAACAAACCAAGCACGACAAGCCAGAGGAAGATCATGATGGAAGCTTTCGCGTATTCACTTATAACGAATTGAAATCTGCCACTCGTGGTTTTCATCACTCGGAAAAAATTGGAGAAGGAGGCTTTGGTTCTGTCTACAAGGGGAGGCTTTTTGATGGAACTTTGGTGGCTGTCAAAGTGCTTTCAATTGAGCTTGAATCCTTGCGAGGAGAGAGGGAATTTGTGGCAGAATTGACTACTCTAGCAAGTATCAAGCACCAAAATCTAGTCATTCTTCGAGGATGTTGTGTAGAAGGAGCTAAGAGATATTTAGTCTATGATTACATGGAGAATAACAGCCTTCGTCACACTTTCTTATGTTCAGAGCAAAACAGGATGAGATTCAGCTGGGAAATACGGAGGGACGTATCCATAGGTGTGGCGAGGGTGCTTGCCTTTCTCCATGAGGAACTCAAACCCCATATTGTGCATAGGGATATCAAAGCCAGCAATATCCTTCTTGATCGAAATTTGACACCAAAAGTTTCAGACTTTGGTTTGGCAAAGCTACTAAGAGATGAAAAATCCCACATCACCACTCGAGTTGCAGGGACATTTGGTTATCTTGCTCCAGAGTATGCCAGTTCTGGACAGGTGTCACGAAAATCAGATGTTTATAGCTTTGGAGTATTACTCTTAGAAATTGTGAGTGGCGAAGCAGTGGTAGATTCTCATCAAGCCATGGAACAACGTTTCATAGTAGAAAAGTTAAGAGACTCTGTGCCCGCTTGGGCAGCGTATGAAGCCAATGATGTTTTGAGAATGGTGGATAAGGTGCTGAATCAGAAGTTTCCAGTGGAAGAAGCGAAACGGTTCCTAACGGTGGGGTTGCGTTGCGTGCAAGAAACCGCCAAGCATAGGCCACGTATGTCAGAGGTTGTGGAGATGTTGACCAACAAGATTGAGATGGAAGAGGTTCCTATTTCAAAACCAGGATTTATCAGTGATTTGAGGAGAGTGAAAAGAGACGAGAAGCAAACGCATTCATTAGAAGAATCAAGTTTTAGTGGAGCAACCTATGCAAGCTCCATGTGGAGTTCGGCTAATCTTGCCCGTTAG 1146 0.4354 MKILCSFSSCFSASVEEQTKHDKPEEDHDGSFRVFTYNELKSATRGFHHSEKIGEGGFGSVYKGRLFDGTLVAVKVLSIELESLRGEREFVAELTTLASIKHQNLVILRGCCVEGAKRYLVYDYMENNSLRHTFLCSEQNRMRFSWEIRRDVSIGVARVLAFLHEELKPHIVHRDIKASNILLDRNLTPKVSDFGLAKLLRDEKSHITTRVAGTFGYLAPEYASSGQVSRKSDVYSFGVLLLEIVSGEAVVDSHQAMEQRFIVEKLRDSVPAWAAYEANDVLRMVDKVLNQKFPVEEAKRFLTVGLRCVQETAKHRPRMSEVVEMLTNKIEMEEVPISKPGFISDLRRVKRDEKQTHSLEESSFSGATYASSMWSSANLAR. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05014 381 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 125 338 - -
Seca1g05014 381 Gene3D Transferase(Phosphotransferase) domain 1 125 339 - -
Seca1g05014 381 SUPERFAMILY Protein kinase-like (PK-like) 29 342 IPR011009 -
Seca1g05014 381 ProSiteProfiles Protein kinase domain profile. 47 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05014 381 FunFam Serine/threonine-protein kinase receptor 16 124 - -
Seca1g05014 381 Gene3D Phosphorylase Kinase; domain 1 16 124 - -
Seca1g05014 381 SMART serkin_6 47 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05014 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Seca1g05014 381 CDD STKc_IRAK 53 328 - -
Seca1g05014 381 Pfam Protein kinase domain 47 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g05014 381 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Seca1g05014 381 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05014 Seca-Chr1 152731957 152734315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05014 34 345 Receptor kinase-like Gene Family AT1G56120 48.397 1.08e-90 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca1g05014 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05014 - - gmx:100813945 521.161