Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05012 ATGGGCAACATCTCAAGCAACGGCGCTGGTAACAACCGTCGCCGACACAGTCACGGTTCAAGACGGAGTCACCCGCCGCCGCCACCTCCGGTGACGCCACAGCCAGAAATTGCGGGCAATCCATTTGTGTACCCTGGTGCTGCACCGTACCCGAACCCTCCCCTGCATTACCCTCAGTACCATTACCCTGGTTACTATCCACCCGTTCCTAATCCTATGCCTCACCATCATCACCATCACCACCACCATCATCATCCACACATGGAGCCAGATTGGGTTCCCCGGTTCTACCCTTGTGGACCTGTTATGCATCAGCCTGCACCCTTCGTTGAGCATCAGAAAGCCGTTACCATAAGGAACGATGTCAATATCAAGAAGGAGACTCTTATGATTGAACCCGATGAGGCTAACCCTGGCTTCTTCCTTGTCTCTTTTACATTTGATGCCACCGTTTCTGGGAGCATCACCATATTTTTCTTTGCAAAAGAAGGTGAAGGCTGTACCCTTACTCCAATGAAGGAAAACCCTGTTGCACCAGTGACTATACAATTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAACCATCTGGAACTGGTATTGATTTTTCAATGTTTGAGGAGTCAGAGTTATTGAAAGTGGGTGACATAGATATCTACCCTCTAGCAGTGAAGGCAGATGCTTCCCCTTGTAATCATGATGGATCAGGTGAAACTCCAACATCTGGTAACACAAACTCTCAGATAACCCAAGCGGTTTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAAGTTATTAAACAGATCTTATGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGAGGAGAATGACCAAGGAAAAGAGTGTGTCATCTGCTTGTCAGAGCCTCGTGACACAATTGTCCATCCCTGCCGACATATGTGCATGTGCAGTGGATGCGCAAAGGTTCTGAGGTTCCAGACAAATCGATGTCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGCCTGAGGAGTGA 1068 0.4803 MGNISSNGAGNNRRRHSHGSRRSHPPPPPPVTPQPEIAGNPFVYPGAAPYPNPPLHYPQYHYPGYYPPVPNPMPHHHHHHHHHHHPHMEPDWVPRFYPCGPVMHQPAPFVEHQKAVTIRNDVNIKKETLMIEPDEANPGFFLVSFTFDATVSGSITIFFFAKEGEGCTLTPMKENPVAPVTIQFQQGLGQKFRQPSGTGIDFSMFEESELLKVGDIDIYPLAVKADASPCNHDGSGETPTSGNTNSQITQAVFEKEKGEFRVKVIKQILWVNGMRYELQEIYGIGNSVESDLEENDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGPEE. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05012 355 Pfam Zinc finger, C3HC4 type (RING finger) 299 345 - -
Seca1g05012 355 CDD mRING-HC-C3HC5_MGRN1-like 299 340 IPR045195 -
Seca1g05012 355 PANTHER MAHOGUNIN 1 350 IPR045194 GO:0061630
Seca1g05012 355 SMART ring_2 301 339 IPR001841 -
Seca1g05012 355 ProSiteProfiles Zinc finger RING-type profile. 301 340 IPR001841 -
Seca1g05012 355 FunFam probable E3 ubiquitin-protein ligase LOG2 285 350 - -
Seca1g05012 355 MobiDBLite consensus disorder prediction 1 44 - -
Seca1g05012 355 SUPERFAMILY RING/U-box 300 345 - -
Seca1g05012 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 350 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05012 Seca-Chr1 152708275 152712115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05012 92 320 C3H Transcription Factor Family AT3G09770 63.025 1.22e-100 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05012 - - aprc:113862864 534.643