Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g05005 ATGGCAACTGAAGCACAAGCCTTTCCCAACAACAACAATAATAATAATGACCAAGGCACTCATAACTCAATTCAAGAGGATGAAGAGTCATCTGAAATAACTGAAGAAGTCCCTAGTAGACAACATGGGAGAAGGAAAAACCTTATCTTGGAGATACCCTCAAGAACACTGGATGAAGCAAGAGAGGATTTTTTGGGAACAAACAAACCTCCAACTCCACCTCCCAGAAGACTGAATTTTTACCCCTCTACAAGCCCTCATTTATCAGGAATCAATGAGTTCCATGGTTCTTCATCTACAAAAAATAAATCAACTATTAAAACCCTCACTCCCAAACCCAATTTTAAATTCCACAACATGAGTTCAGATATTGAAACTTCCACCCTAGCACTTGAAGGTTCATCCCCAGAGCCACCAAAAAAGCCTATGATTTCAAGGACATTATCTTTTACAAAGGTGATCACACCTACAGGGAAGATTACATCATCCTTACCTATAACTCCAATTGCTCAGTCAAATCTTGAGTCTCAACATGGAGGGAACACTGCCTATCTAGCAACACCTGTTAAAAAAGGACAGCAATTACCAATACATCGTTCTCATTCAGTTCCTGTGTTTACCAAATATGGCAACACATCTGCAGGTGGCATGTTTCGTGTTGTTCCTACCACACCACGGTTAACTGGGAGTATTGCCACAGCATCTGCGAAATCTCCACCTGACGATACTGATGAAAGTGAGGATGGAGAAGATATCCCTGAAGAAGAAGCTGTCTGCAGAATTTGTTTGATTGAATTAGGAGAAGGTTCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGCGTGTGCAATTAAATGGTTTAGCATTAAAGGCAATAGAACATGTGATGTGTGCAAGCAGGAAGTTCAGAACCTACCTGTCACTCTTTTGCGAGTTCCAGGTGACTTCATAAGGAGCAGAGTTCATCAATACAGGCAAACCACTGCTTTTCTTGAGTATTTGTTATGCTGA 1035 0.4126 MATEAQAFPNNNNNNNDQGTHNSIQEDEESSEITEEVPSRQHGRRKNLILEIPSRTLDEAREDFLGTNKPPTPPPRRLNFYPSTSPHLSGINEFHGSSSTKNKSTIKTLTPKPNFKFHNMSSDIETSTLALEGSSPEPPKKPMISRTLSFTKVITPTGKITSSLPITPIAQSNLESQHGGNTAYLATPVKKGQQLPIHRSHSVPVFTKYGNTSAGGMFRVVPTTPRLTGSIATASAKSPPDDTDESEDGEDIPEEEAVCRICLIELGEGSDTLKMECSCKGELALAHQACAIKWFSIKGNRTCDVCKQEVQNLPVTLLRVPGDFIRSRVHQYRQTTAFLEYLLC. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g05005 344 ProSiteProfiles Zinc finger RING-CH-type profile. 251 313 IPR011016 GO:0008270
Seca1g05005 344 MobiDBLite consensus disorder prediction 1 21 - -
Seca1g05005 344 CDD RING_CH-C4HC3_MARCH 259 307 - -
Seca1g05005 344 MobiDBLite consensus disorder prediction 22 65 - -
Seca1g05005 344 Pfam RING-variant domain 259 306 IPR011016 GO:0008270
Seca1g05005 344 PANTHER OS02G0165000 PROTEIN 9 325 - -
Seca1g05005 344 SUPERFAMILY RING/U-box 255 310 - -
Seca1g05005 344 MobiDBLite consensus disorder prediction 1 77 - -
Seca1g05005 344 SMART ringv_2 258 307 IPR011016 GO:0008270
Seca1g05005 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 314 IPR013083 -
Seca1g05005 344 MobiDBLite consensus disorder prediction 230 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g05005 Seca-Chr1 152605477 152609101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g05005 172 313 C3H Transcription Factor Family AT2G37950 28.276 8.99e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g05005 - - gmx:100783117 403.29