Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04998 ATGAATATCCGTGAAACGTTGATGAGGGCTGAAAAAGCTTTAAAGATGAGCAAACGCAAGGATTTCTACAAGATTTTGGGAATTTCAAAAACTGCTTCTGCCGCTGAGATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTTGACAAGAGGGAAGAAGCAGAGGCTCAATTCCGAGAAATTGCTGCTGCATATGAGGTCCTAAGTGATGAAGACAAACGCACAAGATATGACAGAGGGGAGGACCTTGAAGACATGGGAATGGGTGGTGGTGGTGGAGGTTTCAACCCCTTTGGTGGTGGGGGGCAGCAATTTACCTTTACTTTTGATGGAGGCTTTCCTGGTGGAGGCTTTCCTGGTGGATTTGGAGGGGGCTTTCCCGGTGGCCATGAATTTCATTTTTGA 423 0.461 MNIRETLMRAEKALKMSKRKDFYKILGISKTASAAEIKRAYKKLALQWHPDKNVDKREEAEAQFREIAAAYEVLSDEDKRTRYDRGEDLEDMGMGGGGGGFNPFGGGGQQFTFTFDGGFPGGGFPGGFGGGFPGGHEFHF. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04998 140 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 1 139 IPR044620 -
Seca1g04998 140 Pfam DnaJ domain 21 84 IPR001623 -
Seca1g04998 140 SUPERFAMILY Chaperone J-domain 14 124 IPR036869 -
Seca1g04998 140 Gene3D DnaJ domain 17 128 IPR036869 -
Seca1g04998 140 FunFam DnaJ subfamily C member 7 19 127 - -
Seca1g04998 140 Coils Coil 57 77 - -
Seca1g04998 140 ProSiteProfiles dnaJ domain profile. 21 87 IPR001623 -
Seca1g04998 140 SMART dnaj_3 20 79 IPR001623 -
Seca1g04998 140 PRINTS DnaJ domain signature 79 98 IPR001623 -
Seca1g04998 140 PRINTS DnaJ domain signature 41 56 IPR001623 -
Seca1g04998 140 PRINTS DnaJ domain signature 23 41 IPR001623 -
Seca1g04998 140 PRINTS DnaJ domain signature 59 79 IPR001623 -
Seca1g04998 140 ProSitePatterns Nt-dnaJ domain signature. 64 83 IPR018253 -
Seca1g04998 140 CDD DnaJ 21 76 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04998 Seca-Chr1 152563241 152569339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04998 17 84 C2H2 Transcription Factor Family AT1G74250 48.611 4.49e-14 66.2