Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04997 ATGCATGTGGGAATTAACCATAACATGCAAATGATGCCCTGTGACCCCTTTTCCATTGGAGGAACTTCCAAAGAGCAAAACACAAACCCTAACCCTAATCCCCCTCCACCTTCCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCTGAGGTCATTGCTCTTTCACCAAAGACTCTCATGGCCACCAACCGTTTCATCTGTGAGATATGCAACAAAGGTTTCCAGAGGGATCAGAACCTTCAACTTCACAGAAGGGGACATAACCTTCCATGGAAGCTGCGTCAGAGGTCCAACAAAGAGACTAAGAAAAAGGTATACATCTGCCCGGAGAAGACCTGTGTCCACCATGACGCCGCCAGGGCACTCGGAGACCTCACCGGAATAAAGAAGCATTACAGCAGAAAACATGGAGAGAAGAAGTGGAAGTGTGAGAAGTGTTCCAAGAAATATGCAGTCCAATCTGATTGGAAAGCTCACACCAAAACTTGTGGCACTAGAGAATATAAGTGTGATTGTGGAACCCTCTTCTCCAGGAAGGACAGTTTTATTACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAGAGTGCTAGACTAACTTCAGTTGCTACCACCAATACTCTAAATTTTAAGAGTGAAGAGGCAAGTTTGATGAACACAGTACAATCTAGTTTGGCACATGGATTAATAGCTGGTAATGGTCAGGGACTTCAAAATGTTGTTGGGGTTTCTCCACAGTTTGGTCCACATGGATTTCATGTAGATTTTAATGGAATTGGTATGTGTGGAGAGCAGCAAAGGCCAAACTTGTCATTATGGTTGAACCAAGGAAATCAACAGATGAATAGTACTAATCTACTTGATCATGAGGTTGTGCAGCAAATGACACAAGCTAATAATGCTTTAATTGGTTCTTCTTCTAATTTTGGAATGTCTGCTTCCAATTCATGTACCTTACCATTGGGGAAAAAAGCAGAATGTGGAACTGAATATTTATCAGCTTCTCCAATGTCAGCCACTGCCCTTCTGCAGAAAGCAGCACAAATGGGTTCAACAAGAAGCAGTGACAATAATAACTCTTCCATTTTCAGTGGCAGTTTTGGAGTAATGACCTCATCTTCCACTACCAATGCTAATGACCAAAACTGTGAAGAGCTTAACCGTGCATTTCAGAATATGAACCAACCACAGAATTTTAATCCAACTACTAGCTTTGGTTCATTTCCACATAATTCATCACATGGTTTTGATCATCCAATGAAGCTTCATCATCATGGTTCAAATAGAGTGGAACATAATAATAACTTGACAAGAGATTTTCTTGGTATGAGTGGAGGAGGAGGAGTTGGCCATCCATTCCTACCACAAGAGCTGGCAAAGTTTGCTTCCATTGGCTCATCCATGAGTTTGAACCAATTTACTGCAAGCCATCAATGA 1446 0.4191 MHVGINHNMQMMPCDPFSIGGTSKEQNTNPNPNPPPPSKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKETKKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVATTNTLNFKSEEASLMNTVQSSLAHGLIAGNGQGLQNVVGVSPQFGPHGFHVDFNGIGMCGEQQRPNLSLWLNQGNQQMNSTNLLDHEVVQQMTQANNALIGSSSNFGMSASNSCTLPLGKKAECGTEYLSASPMSATALLQKAAQMGSTRSSDNNNSSIFSGSFGVMTSSSTTNANDQNCEELNRAFQNMNQPQNFNPTTSFGSFPHNSSHGFDHPMKLHHHGSNRVEHNNNLTRDFLGMSGGGGVGHPFLPQELAKFASIGSSMSLNQFTASHQ. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04997 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Seca1g04997 481 SMART c2h2final6 144 164 IPR013087 -
Seca1g04997 481 SMART c2h2final6 68 90 IPR013087 -
Seca1g04997 481 SMART c2h2final6 109 139 IPR013087 -
Seca1g04997 481 MobiDBLite consensus disorder prediction 29 43 - -
Seca1g04997 481 MobiDBLite consensus disorder prediction 397 426 - -
Seca1g04997 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 459 IPR031140 -
Seca1g04997 481 MobiDBLite consensus disorder prediction 397 414 - -
Seca1g04997 481 MobiDBLite consensus disorder prediction 1 51 - -
Seca1g04997 481 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Seca1g04997 481 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Seca1g04997 481 FunFam protein indeterminate-domain 12-like 47 115 - -
Seca1g04997 481 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Seca1g04997 481 Gene3D Classic Zinc Finger 46 122 - -
Seca1g04997 481 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Seca1g04997 481 Gene3D Classic Zinc Finger 123 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04997 Seca-Chr1 152551653 152554617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04997 9 468 IDZ Gene Family AT5G03150 49.419 3.23e-126 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g04997 zf-C2H2_jaz 7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04997 K25870 - gmx:100812495 594.349