Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04996 ATGGACAAAGATCCTAATTCAGAAATCCAACTCCCCCCTGGATTTAGATTCCACCCTTCTGATGAGGAACTCATTGTTCACTATCTGAGAAACAAAGTGACTTCATCTCCTCTTCCTGCTTCATTCATAGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTCCCAAGCAAAGCTTTGTTTGGGGAAGATGAATGGTATTTCTTTACACCTAGGGACAGGAAGTATCCTAATGGAGTGAGGCCTAATAGAGCAGCTGGTTCAGGTTATTGGAAGGCTACTGGGACTGACAAACCTATTCTTACTTCATGTGGGATGAAGAGCATTGGAGTGAAGAAGGCCCTTGTGTTTTACAAGGGACGTCCACCAAAAGGATCTAAATCTGATTGGATCATGCATGAGTATAGGTTGCATGATTCAATGATCTCTATTTCCAAACAAAGAGGGTCTATGAGAGTAGGTCAATTGCATGACTTCAATTTTTCTTCTAAAAACTTGCTGGATGAGTGGGTGTTATGCAGAGTTCGACAGAAAGCTAGCAGCCCAAGAAGCAATTGGGAAGATTCAAATGAAGCTAGCTATGAACCAATAGGCCAAATTCAACAAATGAATGAGAACTCTAATCCTGAACCAGTGAAAAACTCTGTGCAGAATGAATATCCAATGTTACCTTATATTTTGGCTTCTAAGAGTGCTCTGCCTAATTCAATTGGTATGGCCTCATGCTCAGGCTTTCATTGTAATGATGACATAAAAGCATATTCATTGCATGAAGACAACTTGGACATATTAGGGGCTCAGTTCTTAGCATCTGCAACAGAGGGCTTGTTTAATCCACTGAAGAGAAAAGCAATTGAAGAAAATAACTTGGATTTTTATGCTCCCATCAATCAAAAGCTAAGCAGAGAAGTTGATGATGGGAATCAAAGAGTTGAGATAGAAGTAAGCAAAGGCTATAATTTCAACAACTTTGACCAGTGGACTTCGATCATACAACCTCAAGAGCTTAATAGCTTAGCTTTTACGGGATATACAAGAGTAGTTTAG 1050 0.3962 MDKDPNSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKYNPWELPSKALFGEDEWYFFTPRDRKYPNGVRPNRAAGSGYWKATGTDKPILTSCGMKSIGVKKALVFYKGRPPKGSKSDWIMHEYRLHDSMISISKQRGSMRVGQLHDFNFSSKNLLDEWVLCRVRQKASSPRSNWEDSNEASYEPIGQIQQMNENSNPEPVKNSVQNEYPMLPYILASKSALPNSIGMASCSGFHCNDDIKAYSLHEDNLDILGAQFLASATEGLFNPLKRKAIEENNLDFYAPINQKLSREVDDGNQRVEIEVSKGYNFNNFDQWTSIIQPQELNSLAFTGYTRVV. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04996 349 ProSiteProfiles NAC domain profile. 11 179 IPR003441 GO:0003677|GO:0006355
Seca1g04996 349 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
Seca1g04996 349 Gene3D NAC domain 20 182 IPR036093 GO:0003677|GO:0006355
Seca1g04996 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 229 - -
Seca1g04996 349 SUPERFAMILY NAC domain 9 179 IPR036093 GO:0003677|GO:0006355
Seca1g04996 349 FunFam NAC domain-containing protein 72-like 20 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04996 Seca-Chr1 152528833 152530507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04996 10 188 NAC Transcription Factor Family AT1G61110 65.746 5.32e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g04996 NAM 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04996 - - gmx:100788799 559.681