Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04995 ATGAGTGTCATCGACATTATTACCAGAGTTGATTCCATTTGTAAAAAGTATGACAAATACGACGTCGATAAGCAAAAGGATTCCAATCTCACCGGGGATGATGCATTCGCCAAACTCTACACCGTCATTGACGCCGACATTGAGGCAGCGCTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAGGTAAGGCATCTGCTGTAGCGATCAATGCCGAGATTCGTCGTACAAAAGCTAGGTTGCTGGATGAGGTTCCCAAGTTGCAGAGGTTGGCTGTAAAGAAGGTAAAGGGGCTTTCATCACAAGAATTTGCGGCCCGTAATGATTTGGTTCTTGCATTGCCAGAGAGGATCCAAGCAATCCCAGATGGGACCCCTACTGTGCCCAAACAATCTGGAGGTTGGGGATGGGGAGCTTCTGCTTCACGTCCTGAAATTAAATTTGATTCAGATGGGCAATTTGACGATGAATACTTCCAACAAACAGAAGAATCAAGTCAATTCAGACAGGAGTATGAAATGCGTAAAATGAAACAGGATCAAGGTTTGGATATGATCGCAGAAGGGTTGGATACTTTGAAAAACATGGCACACGATATGAATGAGGAACTGGATAGACAAGTTCCATTGATGGATGAGATTGATACTAAGGTGGATAAGGCATCCTCTGACCTTAAAAATACCAATGTTAGACTTAAAGATACAGTGACCCAGCTTCGATCCATCCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAGTTTTGGGAATTGCTGCCTATTTGTACAAGAAGAGGAGATGA 801 0.4282 MSVIDIITRVDSICKKYDKYDVDKQKDSNLTGDDAFAKLYTVIDADIEAALQKAETASKEKGKASAVAINAEIRRTKARLLDEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPTVPKQSGGWGWGASASRPEIKFDSDGQFDDEYFQQTEESSQFRQEYEMRKMKQDQGLDMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVTQLRSIRNFCIDIVLLIIVLGIAAYLYKKRR. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04995 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 172 234 IPR000727 -
Seca1g04995 266 Pfam SNARE domain 209 258 IPR000727 -
Seca1g04995 266 SMART tSNARE_6 167 234 IPR000727 -
Seca1g04995 266 SUPERFAMILY SNARE fusion complex 165 232 - -
Seca1g04995 266 PANTHER SYNTAXIN 44 253 IPR045242 -
Seca1g04995 266 CDD SNARE_Qc 177 232 - -
Seca1g04995 266 Gene3D - 172 233 - -
Seca1g04995 266 FunFam Putative syntaxin-71-like 172 233 - -
Seca1g04995 266 ProSitePatterns Syntaxin / epimorphin family signature. 178 217 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04995 Seca-Chr1 152525877 152530892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04995 1 262 SNARE and Associated Proteins AT3G09740 76.718 5.27e-153 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04995 K08506 - gmx:100819272 444.506