Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04993 ATGGGTCATAGACACTTATATAACACATCTCCATTGTTTGAGGGTGAGGCTGACCAGAATTGGAATCATATGCATACTGATCAACATTATGTGAACCTCGGTAGGAATAGCACTTCAGAGAATGGTTCTTTTATTTATCCTGTGGAAAATATGGCTATAGATAACATATCTTTCCCTTCTCATTGGAACTCCACCACAAGGTCAAATGGATATGCATCCTCAAGTCTCAACATTGAAGTGCCTCCTCATCAATCAGATGCATCAGGCACTTCTAATGATCATTTTATGCATTCATCTAGTGCTGGAGCGTTTTTTGCAGTGTCTGAAAATTATGTACACCAGCCTTCTTCATCTAATTATGATAGACAAGCATTCCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGGCCTCACAAGCGAAAGAGCCCTGGAATTCCTTCAGTCTATGAGAGAGGCAGTACAAGCAGATATTTCAATGCTGGGAGTTCAACTGATCTTCCTATGTCTTCAGAATCACGGCCAGAGAAGCCAAATGTGGATTCTCAATATATGCCCTGGGATCATGTTGCTATGGCACCCACATTTAGAGGTGCTAGCCTCTCAATAAAGGGTGAGAGTTCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCAAGTAATCATTCACACAATTCCTACTCTGCTGTCCCACCAGTTGACCATTCAAGCATGGTGGATCTTTCTGGTCAGATTTCTACCTCTTTGACAAGGGATTGGAGCCAAATGAACATATCTCCTGCTAATGGAAGGGTGTTATTACCAGATACTAGTGCTTTTGGTTTTGAGACAAATCACTTCCTTGTTGGAAGTGGTGCTACTGCTAGTAATGCTTCTGTAGATGTTGGGGGCTTCCATCATGAATATGGTACAAACAGAAATCCCACTGCTTCTCAAAGTTTTCATAATCCGACTCAGACCACTAGGGGAATTCGAAGTAACTATTCTCAGAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCGCTTGGGACATGTGACACCTTCAGATGATGGATTACCTATGGTAGCTGAAAGTTACAATTCTAGACACCCAAGGTCGTTGGCTACCATTGGCTGGAGGAACGGTGATAGAAATGGGAGGTCCAGAGTTTCTAGTGAGAGATATCGATCATTGGCTGATGAGGCTGGTCTCCATGATCGATTTTCCTCTGAGGTACCTGTCAGTATATTGTGGAACTATTTTTGTGGTTTCATGATTGTTGAGCGCGCTTCACTGTATGGTTCTAGGAATATGCTTGATCAGCACAGAGACATGAGGATGGACATAGATAACATGAGCTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCCATGTGAACACAGGAATGTCTGAGGATTTGATTTCCAAGTGTTTGACAGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAGTTGTGTAGTCTGTCTGGAAGAGTACAAGAACATGGACGATGTTGGGACACTTAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGATAAGAAGGATAAATAA 1683 0.4219 MGHRHLYNTSPLFEGEADQNWNHMHTDQHYVNLGRNSTSENGSFIYPVENMAIDNISFPSHWNSTTRSNGYASSSLNIEVPPHQSDASGTSNDHFMHSSSAGAFFAVSENYVHQPSSSNYDRQAFHVDGGFIDLTMGSGRGPHKRKSPGIPSVYERGSTSRYFNAGSSTDLPMSSESRPEKPNVDSQYMPWDHVAMAPTFRGASLSIKGESSLRNVRSRSALDLESNLARTHLSSNHSHNSYSAVPPVDHSSMVDLSGQISTSLTRDWSQMNISPANGRVLLPDTSAFGFETNHFLVGSGATASNASVDVGGFHHEYGTNRNPTASQSFHNPTQTTRGIRSNYSQRSTPTFRASSSLRLGHVTPSDDGLPMVAESYNSRHPRSLATIGWRNGDRNGRSRVSSERYRSLADEAGLHDRFSSEVPVSILWNYFCGFMIVERASLYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVNTGMSEDLISKCLTETIYCSSEQSQDEGSCVVCLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKVCPICKASALPEDKKDK. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04993 560 Pfam Ring finger domain 506 549 IPR001841 -
Seca1g04993 560 CDD RING-H2_RNF24-like 507 552 - -
Seca1g04993 560 MobiDBLite consensus disorder prediction 136 183 - -
Seca1g04993 560 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 553 IPR013083 -
Seca1g04993 560 MobiDBLite consensus disorder prediction 153 182 - -
Seca1g04993 560 ProSiteProfiles Zinc finger RING-type profile. 507 549 IPR001841 -
Seca1g04993 560 MobiDBLite consensus disorder prediction 319 352 - -
Seca1g04993 560 MobiDBLite consensus disorder prediction 316 352 - -
Seca1g04993 560 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 472 553 - -
Seca1g04993 560 SMART ring_2 507 548 IPR001841 -
Seca1g04993 560 SUPERFAMILY RING/U-box 497 553 - -
Seca1g04993 560 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 110 553 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04993 Seca-Chr1 152504482 152507167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04993 1 559 C3H Transcription Factor Family AT2G37150 43.386 5.76e-122 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04993 - - gmx:100803627 964.526