Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04989 ATGGCCGATGACTTTGACTTTGCCGATAAAGTTCCTCCTTCCTTCGATCGCGTGGATTCTGGATCCCAAGGTTTCAACCCAGGCTTAATAGTTCTCTTGGTTGTTGCTGGGTTGCTATTGACATTCCTCATTGGAAATTATGTGCTCTACACGTATGCACAGAAGACACTCCCTCCTAGAAAAAAGAAGCCAATCTCAAAAAAGAAGATGAGGAAGGAGAGACTGAAGCAAGGCGTCTCAGCACCTGGAGAATAG 255 0.4549 MADDFDFADKVPPSFDRVDSGSQGFNPGLIVLLVVAGLLLTFLIGNYVLYTYAQKTLPPRKKKPISKKKMRKERLKQGVSAPGE. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04989 84 MobiDBLite consensus disorder prediction 58 84 - -
Seca1g04989 84 Pfam DNA binding protein S1FA 21 84 IPR006779 GO:0003677|GO:0005634|GO:0006355
Seca1g04989 84 PANTHER DNA-BINDING PROTEIN S1FA2 1 84 IPR006779 GO:0003677|GO:0005634|GO:0006355
Seca1g04989 84 MobiDBLite consensus disorder prediction 60 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04989 Seca-Chr1 152480405 152482332 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Seca1g04989 S1FA 4.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04989 - - gmx:100499820 141.354