Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04983 ATGCTTATGAGGCTTAAGGACCCTTCAAAAGATGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTACCCAAACATATCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAAATTTCATATCAAGTTAATGACTAAACAGCTTTTAAGAAATGCTGATTTTTCAAAATTTCCATGTGACATACTTATATCCACACCTCTTCGATTACGCTTGGCTATCCGGAGGAAAAAAGTTGATCTTAGCAGAGTTGAGTATCTTGTCTTGGATGAATCTGATAAACTATTTGAGCCTGAATTGTTCAAGCAAATTGATTCTGTTATCAAAGCATGCTCGAATCCCTCAATAATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAACATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTATGGCAATTCGTCAAAGCTTTGCAGAGAGTCTTAATCCTCCAGTATTAGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTACGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTGTTGATAATTTCAGAATGGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTCGGGGCATGGACTTCAAAGGTGTGAACTGTGTGGTCAATTATGATTTCCCAGATTCTGCTGCTGCATATATCCATAGAATAGGTCGTTCTGGCAGAGCAGGGAGAACTGGAGAAGCGATTACATTTTACACAGAGGAAGACATTCCATTCCTGCGGAATGTAGCTAATCTTATGGCAGCGTCAGGTTGTGAGGTTCCATCCTGGCTAAAGGATTTGCGCAAAAGGAAGTGGAAGAAACACCGGCCTAAAAGAGATTCAATCTCAACCAAACCAGATGTATAA 1011 0.4026 MLMRLKDPSKDGIRAVILCHTRELSTQTYRECKKLAKGKKFHIKLMTKQLLRNADFSKFPCDILISTPLRLRLAIRRKKVDLSRVEYLVLDESDKLFEPELFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLMAIRQSFAESLNPPVLVFVQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRMGKTWVLIATDVVARGMDFKGVNCVVNYDFPDSAAAYIHRIGRSGRAGRTGEAITFYTEEDIPFLRNVANLMAASGCEVPSWLKDLRKRKWKKHRPKRDSISTKPDV. 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04983 336 SMART ultradead3 1 159 IPR014001 -
Seca1g04983 336 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 5 323 - -
Seca1g04983 336 SMART helicmild6 196 277 IPR001650 -
Seca1g04983 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 295 IPR027417 -
Seca1g04983 336 Pfam DEAD/DEAH box helicase 8 131 IPR011545 GO:0003676|GO:0005524
Seca1g04983 336 CDD SF2_C_DEAD 156 286 - -
Seca1g04983 336 Pfam Helicase conserved C-terminal domain 179 277 IPR001650 -
Seca1g04983 336 Gene3D - 1 155 IPR027417 -
Seca1g04983 336 Gene3D - 156 333 IPR027417 -
Seca1g04983 336 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 144 IPR014001 -
Seca1g04983 336 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 155 316 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04983 Seca-Chr1 152438991 152443646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04983 7 315 Eukaryotic Initiation Factors Gene Family AT3G19760 32.154 6.70e-44 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04983 K14779 - gmx:100800969 614.764