Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04980 TTGGCAAGATCTGATTTTTCAGATTTTCCCTCTTCACAAGGAGAGAGAGAGAGAAAAACAAAACAAAAGAAAAAAGCTATAGTTTGGTGCAAGTGTGATCTTCAAGTTGCAATCTTTTTGTTGAGAGGGAGAGATAGGGTCAGAAGAAGAAGAAGATATTTGAGATCTGTCACTTTGTTTCAGTTCAGGATCAAATTAAGGAATGCCAAGAAAATGGGGAGGAAGGGAAATTGGTTTTCTACTGTGAAGAAAGCTCTCAGCCCTGACTCAAAGGTGAGGGAAGATCAGAAATCAAGTAAATCAAAGAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTCCAGACTCATCATACCCGGAAACTGATAAAGCACCACCTCTTCCTCCACCGGAAGAGATTAAATTAACTGAGATAGAAAATGAAAACAGTCACGTTCATGTTGCTGAAGTAGCAACTGTTGTGGATGTTGAGGAACCTGTTCCTTCTGCTCAAACAGCAGTGGTTAGGGTTGAACCTGCCACAATTGCTCGGTTTGCTGGTAAACCAAAGGATGAAGTGGCAGCAATCAAGATTCAAACAGCTTTTCGGGGATACTTGGCAAGAAGAGCATTGCGGGCTTTGAGAGGGCTGGTCAGGTTGAAATCATTGATGGAAGGACCCATTGTAAAACGCCAAGCCATGAGTACTCTCCGCTCTATGCAGACATTAGCTCGTGTGCAATCTCAGATCCGTTCTAGGAGGATCAGAATGTTAGAGGAGAATCAGGCTCTACAGAAACAGCTCTTACAGAAGCATGCAAGAGAGCTTGAGAGCATGCGGATTGGGGAGGAATGGGATGATAGCCTGCAATCAAAAGAACAGATCGAAGCCAAGTTACTAAGCAAGTATGAGGCTGCTATGAGAAGAGAAAGAGCGCTGGCTTATGCATTCACTCATCAGCAAAACTGGAAGAACTCATCTAGATCTATAAATCCAATGTTCATGGATCCAACCAATCCTAGCTGGGGTTGGAGCTGGTTAGAACGATGGATGGCAGCCAGGCCTTGGGAGGGTCGTAGCCTTATAGATAAAGAGCTGAATGACCATTCATCTGTAAAAAGTTCAAGCCGTAGCATTACTGGTGGAGGAGAAATCAGCAAATCATTTGCTCGTTTCCAGCTCAATTCTGAAGTACATTCTCCAGCAGCCAGTCAAAATCCTGGCTCACCTAGCTTTCCACCCCATTCAACTCCTTCCAGGCCAGCTTCTTCATCAGTTGGTAAGAAGCCAAAGAAGGTAAGCCCAAGGGGCAGCTGGGTTATGGATGATGACTCCAAAAGCATGGTCAGTGTACAGTCAGACCGATTCCGGAGGCACTCCATTGCCGGTTCAACAGTCAGAGATGATGAGAGCCTTGCTAGCTCTCCAGCAGTTCCAAGTTACATGGTACCAACTCAATCTGCAAAAGCCAAGTCAAGGACACAAAGTCCATTAGCCACAGAAAATGGTAAAACAGAAAAGGGCTCCTTTGGTACTGCAAAGAAGCGTCTTTCTTTCCCAGCTTCACCTGCCAGACCAAGGCGTCATTCAGGTCCACCAAAGGTAGAAAGCAGCAGCATAAATGCAGAGCTCACTGTGGAAAATGGTGTGGCCAGTTGA 1638 0.4505 LARSDFSDFPSSQGERERKTKQKKKAIVWCKCDLQVAIFLLRGRDRVRRRRRYLRSVTLFQFRIKLRNAKKMGRKGNWFSTVKKALSPDSKVREDQKSSKSKKKWFGKQKLQTPDSSYPETDKAPPLPPPEEIKLTEIENENSHVHVAEVATVVDVEEPVPSAQTAVVRVEPATIARFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKSLMEGPIVKRQAMSTLRSMQTLARVQSQIRSRRIRMLEENQALQKQLLQKHARELESMRIGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTHQQNWKNSSRSINPMFMDPTNPSWGWSWLERWMAARPWEGRSLIDKELNDHSSVKSSSRSITGGGEISKSFARFQLNSEVHSPAASQNPGSPSFPPHSTPSRPASSSVGKKPKKVSPRGSWVMDDDSKSMVSVQSDRFRRHSIAGSTVRDDESLASSPAVPSYMVPTQSAKAKSRTQSPLATENGKTEKGSFGTAKKRLSFPASPARPRRHSGPPKVESSSINAELTVENGVAS. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04980 545 Pfam Protein of unknown function (DUF4005) 461 520 IPR025064 -
Seca1g04980 545 MobiDBLite consensus disorder prediction 391 545 - -
Seca1g04980 545 Pfam IQ calmodulin-binding motif 187 205 IPR000048 GO:0005515
Seca1g04980 545 MobiDBLite consensus disorder prediction 89 131 - -
Seca1g04980 545 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g04980 545 PANTHER IQ-DOMAIN 5-RELATED 72 527 - -
Seca1g04980 545 MobiDBLite consensus disorder prediction 527 545 - -
Seca1g04980 545 MobiDBLite consensus disorder prediction 471 500 - -
Seca1g04980 545 ProSiteProfiles IQ motif profile. 184 212 IPR000048 GO:0005515
Seca1g04980 545 SMART iq_5 183 205 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04980 Seca-Chr1 152418157 152422485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04980 72 545 IQD Protein Family AT5G03040 52.941 9.96e-150 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04980 - - gmx:100800080 720.309