Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04977 ATGGGAGCTGCCCGCAAGCTAAAGTCCCACCGTAGGAGGCAAAGGTGGGCAGACAAGGCATACAAAAAATCTAATCTTGGCAATGAATGGAAGAAGCCTTTTGCTGGTTCATCCCATGCGAAGGGTATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTCGAAAATGTGCCAGGGTTCAACTTATCAAGAATGGGAAGAAGATTGCTGCTTTTGTGCCAAATGATGGTTGTTTAAATTACATTGAAGAGAATGATGAAGTCTTGATAGCTGGATTTGGACGTAAAGGTCATGCCGTGGGTGATATTCCTGGTGTTAGATTCAAGGTTGTGAAGGTTTCTGGTGTCTCTCTCCTGGCTCTTTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA 411 0.4428 MGAARKLKSHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04977 136 CDD Ribosomal_S23 20 133 IPR005680 GO:0003735|GO:0006412|GO:0015935
Seca1g04977 136 MobiDBLite consensus disorder prediction 1 22 - -
Seca1g04977 136 FunFam 40S ribosomal protein S23 19 136 - -
Seca1g04977 136 SUPERFAMILY Nucleic acid-binding proteins 14 134 IPR012340 -
Seca1g04977 136 Gene3D - 19 136 IPR012340 -
Seca1g04977 136 MobiDBLite consensus disorder prediction 1 18 - -
Seca1g04977 136 Pfam Ribosomal protein S12/S23 26 135 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca1g04977 136 NCBIfam 30S ribosomal protein S12 3 135 IPR005680 GO:0003735|GO:0006412|GO:0015935
Seca1g04977 136 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 10 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca1g04977 136 ProSitePatterns Ribosomal protein S12 signature. 53 60 IPR006032 GO:0003735|GO:0005840|GO:0006412
Seca1g04977 136 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 136 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04977 Seca-Chr1 152385057 152386884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04977 1 136 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 94.853 2.04e-90 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04977 K02973 - twl:119995137 273.478