Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04975 ATGCACAGAACTCCAGAAGAGACGGAGCAGAGGATCCGACATGGATTCGGATCCTTCTCCATGGACCTATTAGAGTTACTTGACATTTACTTTCCTCAGCAACTGTTCACCATCGAAGAAAACTGGCTTAATCTCACATCCGCTCTTCTTTCCTTCTTTTCTTCTCCGCCGGGCCTAAATATCGCTTCTCAGGTGAAAAATGATTACGGAAACTATGTTTTGTCACTTGACTTTGAACAATTCAAAAAAATGTGTCATGTTGAGGAATTCTATGAAATGTTAATGGAGAAACCTAAAATTGCTCTCTTATGCATGAGTGCTGCCGTTCACAAGGTTTTGCTTTCCAAATGGGATATTGAAAAGCTGGAGCTTGGTGCAAAAGTAGATATCCGTCTTCATAACTGTCCTGAAACTATGATTGCGCTGAAGAACTTAAAAGCAGCTTACATTGACAAACTTGTCTCAGTGCGAGGCACTGCTGTGAAAGTCAGTACTGTCAGGCCTCTTGTGGTAGAAATGAGTTTCGAATGCAGTAAGTGTAAACAAACAATTACGCGTATATTTCCTGATGGAAAATTTTCACCACCATCAACTTGCAATTTGAATGGCTGCAAGAGCAAAATCTTTAATCCATTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAACCTGAAGATCATGAAGAAGGACGGGTGCCTCGAACAGTGGAATGTGAGCTTACCCAAGATCTTGTTGATGCATGCATACCTGGAGATGTGGTAACTGTTACTGGAATTATCAGAGGAATTAACACTTACATGGATATTGGAGGAGGCAAGTCAAAGAACAGAAACCAGGGATTTTACTATCTATATCTTGAAGCTATATCCGTAAAAAATTCTAAGTCACAGTCCATACCTGAGGATTCACAAGACTCTAATCCAAAAGCTAGACCGACTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGTGAAGTTTGCGGAGGAGCATGGTTCAGATTTATTTCGGCAAATCCTTCAATCTATATGCCCGTCCATCTACGGGCATGAACTTGTTAAAGCTGGGATAACACTGGCATTATTTGGTGGTGTAAGAAAGCATTCTATGGATCAAAATAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATCGTTGGTGATCCTGGTCTAGGTAAGAGCCAGCTGCTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAATGACTACGCTTTTGAGGCTGTTCTTATTTTCTCTGAGTTATTGTTGGAATTCCTGACAGGTGCTATGGTGCTGGCTGATAGTGGATTGTGCTGTATTGATGAGTTCGATAAAATGTCATCAGAGCATCAGGCTTTACTAGAGGCAATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGGCTAGTAGCAAGTTTATCTTCCCGGACGTCTGTCTTAGCGGCTGCAAACCCCGTTGGTGGTCATTATAATCGGGCAAAAACTGTAAACGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTTGATTTAATTTTCATACTGCTGGACAAACCTGATGAACTTCTGGACAAGCGAGTCTCGGAGCACATCATGTCACTTCATGCTGCGCATGGACAACATTCACCCGCATTGAAAAAGCGACGTGGAGATCCACCTTCTGATTCAAGAGCTGCTGAATCACAGAATGCTGAAGGTGTAGATTTGGGTGTTGGATCTGGTTCTTTAATTTCAAGGTTGAGACTTGACCCACAGAGAGACCGTGATTTTGTTCCATTACCCGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTCTCCTAGGATGTCCAAGCTAGCAGCAGAAATCTTGCAAAAGTTTTACCTAAAACTAAGAGACCATAATACTTCAGCTGATGGTACTCCTATAACAGCAAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGAGCTCGGCTGGACTTGAGAGCAGAAATAACGGCCCAGGATGCAATGGATGTTGTCGAAATCATGAAGGAATCCCTGTATGATAAATATGTTGATGAGCATGGTGTCGTGGATTTTGGTCGAAGTGGGGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCCCTTAACAAGCAATCGGAACTGGAACAGAAAGATTACTTTTCGATATCTGAAATATACAATCTGGCGGATAGGATTTCCTTGAAAGTTCCTGATATTGACACTTTCATCGATAATTTAAACAGCGTTGGTTATCTACTCAAAAAAGGACCAAAGACATACCAGGTGCTATCTTCTTCTTATACACGGAGCCAGTCGTTTCGGACAAGGGGCTAA 2457 0.4184 MHRTPEETEQRIRHGFGSFSMDLLELLDIYFPQQLFTIEENWLNLTSALLSFFSSPPGLNIASQVKNDYGNYVLSLDFEQFKKMCHVEEFYEMLMEKPKIALLCMSAAVHKVLLSKWDIEKLELGAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECSKCKQTITRIFPDGKFSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYLEAISVKNSKSQSIPEDSQDSNPKARPTELFDLFSFSSKDLEFVVKFAEEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSMTNDYAFEAVLIFSELLLEFLTGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRVSEHIMSLHAAHGQHSPALKKRRGDPPSDSRAAESQNAEGVDLGVGSGSLISRLRLDPQRDRDFVPLPGQLLRKYIAYARSFVSPRMSKLAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRAEITAQDAMDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDYFSISEIYNLADRISLKVPDIDTFIDNLNSVGYLLKKGPKTYQVLSSSYTRSQSFRTRG. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04975 818 PRINTS Mini-chromosome maintenance (MCM) protein family signature 464 478 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca1g04975 818 PRINTS Mini-chromosome maintenance (MCM) protein family signature 491 504 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca1g04975 818 PRINTS Mini-chromosome maintenance (MCM) protein family signature 391 406 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca1g04975 818 PRINTS Mini-chromosome maintenance (MCM) protein family signature 515 527 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca1g04975 818 PRINTS Mini-chromosome maintenance (MCM) protein family signature 542 550 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca1g04975 818 Gene3D - 326 727 IPR027417 -
Seca1g04975 818 ProSiteProfiles MCM family domain profile. 348 568 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca1g04975 818 SMART mcm 138 718 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca1g04975 818 Pfam MCM P-loop domain 346 572 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca1g04975 818 CDD MCM8_WHD 739 804 - -
Seca1g04975 818 Gene3D - 169 219 - -
Seca1g04975 818 Gene3D - 142 271 IPR012340 -
Seca1g04975 818 Pfam MCM OB domain 142 270 IPR033762 -
Seca1g04975 818 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 73 755 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca1g04975 818 MobiDBLite consensus disorder prediction 574 607 - -
Seca1g04975 818 Pfam MCM AAA-lid domain 634 717 IPR041562 -
Seca1g04975 818 SMART AAA_5 392 557 IPR003593 GO:0016887
Seca1g04975 818 CDD MCM8 352 716 - -
Seca1g04975 818 Coils Coil 476 496 - -
Seca1g04975 818 SUPERFAMILY Nucleic acid-binding proteins 69 272 IPR012340 -
Seca1g04975 818 FunFam DNA helicase MCM8 isoform X1 169 220 - -
Seca1g04975 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 723 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04975 Seca-Chr1 152357996 152366518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04975 20 804 Core DNA Replication Machinery Family AT3G09660 72.046 0.0 1164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04975 K10737 - gmx:100784549 1374.76