Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04974 ATGGCCGACGGTCCGGCGAGTCCAGGCGGCGGAAGTCACGAGAGCGGCGAGCACAGCCCTCGTTCTAACATCCGTGAGCAGGACAGATTCCTTCCTATCGCCAACATCAGTCGCATCATGAAGAAGGCACTCCCTGCCAATGGAAAAATCGCCAAGGATGCTAAAGAGACCGTTCAAGAGTGCGTCTCTGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAAACCATTAACGGCGACGATTTGCTCTGGGCGATGGCCACTCTTGGTTTCGAGGATTATATTGATCCCCTTAAGATTTACCTCAGCAGATACAGAGAGTTCCAGGGTGATACCAAGGGTTCTGCCAAGGGTGGAGACTCATCTGCCAAGAAAGATGTTCAACCAAGTCCTAATGCTCAGCTTGCTCATCAAGGTTCTTTCTCACAAAGTGTGAATTACGCAAATTCTCAGGGTCAACATATGATGGTTCCTATGCAAGGCCCAGAGTAG 516 0.5039 MADGPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREFQGDTKGSAKGGDSSAKKDVQPSPNAQLAHQGSFSQSVNYANSQGQHMMVPMQGPE. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04974 171 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Seca1g04974 171 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Seca1g04974 171 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Seca1g04974 171 Gene3D Histone, subunit A 17 161 IPR009072 GO:0046982
Seca1g04974 171 SUPERFAMILY Histone-fold 27 130 IPR009072 GO:0046982
Seca1g04974 171 MobiDBLite consensus disorder prediction 1 27 - -
Seca1g04974 171 FunFam Nuclear transcription factor Y subunit B-3 19 143 - -
Seca1g04974 171 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Seca1g04974 171 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca1g04974 171 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca1g04974 171 MobiDBLite consensus disorder prediction 119 171 - -
Seca1g04974 171 MobiDBLite consensus disorder prediction 133 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04974 Seca-Chr1 152350039 152356143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04974 1 169 CCAAT-HAP3 Transcription Factor Family AT2G37060 76.836 5.26e-88 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca1g04974 CBFD_NFYB_HMF 7.6e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04974 K08065 - gmx:100820170 311.997