Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04972 ATGTTGGATCTCAATCTCAACGCCGATTCCCCTTCCGATAACCACACTCTCCCCCTCTCCAACACTCAAATGGAAAGCTCCGGCAGCTTTGATTCCTCCGTCGTCAACGCCGCCGACACCGAAGATTCTTCCTCTTACGGCGATGCCTTCGCTTACAACTTCGCCATACTCAACAATAGCAACAGTAACAGCGCCGTCGACGACGCCACCACCTCCAGAGCACTTCAACTCCCCCTCGGAGACGCTTCCTCTGTACGGACCATTCAGCTTTTTCCGGCCGCCGAGTCAGGAATCTCGCCGTCTGCTGGAAGTAAAGGATGGTTAGATTTCTCGTCGGATCATCATAACGGCGGTGTGCCGGAGCAGAGGATTGTTGCTCCACGGCCACAACAGGTGAAGAAGAGCCGTCGAGGACCGAGGTCGAGGAGCTCGCAGTATCGCGGCGTTACTTTCTATCGGAGAACGGGAAGATGGGAATCGCATATTTGGGATTGTGGGAAGCAAGTGTACTTAGGTGGATTTGATACTGCGCATGCTGCAGCGAGGGCTTATGATCGAGCTGCAATTAAGTTCCGCGGCGTTGATGCGGATATCAATTTCAACGTCAGCGATTATGAAGATGATATAAAACAGATGAGTAACTTCACGAAGGAAGAGTTTGTGCATATTCTGCGTCGACAGAGCACTGGTTTCTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTACATAAATGCGGGCGATGGGAAGCTCGAATGGGGCAGTTTCTTGGGAAGAAGTATATATATCTCGGGCTATTCGATAGTGAGCTAGAGGCTGCAAGAGCTTATGATAGGGCTGCTATAAAATGCAATGGAAGGGAAGCAGTCACAAACTTCGAGCCCAGCTCATATGAAGGGGAGTTAATTTCTCAGTCTGATAATGAAGATAACAAGCAAAGTCTTGATCTTAATTTGGGCATAGCTCCTCCTTCTAACTCTGATGGTCAAATGAAGAATGTACACCACAATGGGAGTGGTTTACAAGTTCAGCGTAGCTGGGATGATATCTCTGTTGATAAAAGTCTTATGTGTGAGCACTCTGGACCAAGATCAATGAATGTTCAGCCATCTTATGGCTTCTCCATGGCATCTGAGCATCAACCTTCAGCCTGGAGTGGTACCAATTTCTTTCCCATCTGCAAGGAAACAGAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCCGTGCCAAATTGGGCATGGCAAGTCCAAGGTCCTTATGGCGGGGCAACTATGATTCCACCGTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAGTAATACCATCAGCTGCGGATAGTCAAATTCAATTTCCAAACATGACGTTCCTTCATCCTCATTTTCCTCCTTCAATCACTAACTCCAGCACCATATCCCCATTCTACTGCAGGAGCTGA 1443 0.4851 MLDLNLNADSPSDNHTLPLSNTQMESSGSFDSSVVNAADTEDSSSYGDAFAYNFAILNNSNSNSAVDDATTSRALQLPLGDASSVRTIQLFPAAESGISPSAGSKGWLDFSSDHHNGGVPEQRIVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYEDDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSSYEGELISQSDNEDNKQSLDLNLGIAPPSNSDGQMKNVHHNGSGLQVQRSWDDISVDKSLMCEHSGPRSMNVQPSYGFSMASEHQPSAWSGTNFFPICKETETAIEKRMEAAPVPNWAWQVQGPYGGATMIPPFSAAASSGFPSTVIPSAADSQIQFPNMTFLHPHFPPSITNSSTISPFYCRS. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04972 480 MobiDBLite consensus disorder prediction 7 32 - -
Seca1g04972 480 SMART rav1_2 145 207 IPR001471 GO:0003700|GO:0006355
Seca1g04972 480 SMART rav1_2 237 300 IPR001471 GO:0003700|GO:0006355
Seca1g04972 480 MobiDBLite consensus disorder prediction 1 32 - -
Seca1g04972 480 ProSiteProfiles AP2/ERF domain profile. 237 294 IPR001471 GO:0003700|GO:0006355
Seca1g04972 480 FunFam AP2-like ethylene-responsive transcription factor 144 203 - -
Seca1g04972 480 CDD AP2 145 203 IPR001471 GO:0003700|GO:0006355
Seca1g04972 480 PRINTS Ethylene responsive element binding protein signature 276 296 IPR001471 GO:0003700|GO:0006355
Seca1g04972 480 PRINTS Ethylene responsive element binding protein signature 238 249 IPR001471 GO:0003700|GO:0006355
Seca1g04972 480 SUPERFAMILY DNA-binding domain 144 203 IPR016177 GO:0003677
Seca1g04972 480 CDD AP2 236 296 IPR001471 GO:0003700|GO:0006355
Seca1g04972 480 SUPERFAMILY DNA-binding domain 236 295 IPR016177 GO:0003677
Seca1g04972 480 ProSiteProfiles AP2/ERF domain profile. 145 201 IPR001471 GO:0003700|GO:0006355
Seca1g04972 480 Gene3D AP2/ERF domain 144 203 IPR036955 GO:0003700|GO:0006355
Seca1g04972 480 Gene3D AP2/ERF domain 236 295 IPR036955 GO:0003700|GO:0006355
Seca1g04972 480 FunFam AP2-like ethylene-responsive transcription factor 236 296 - -
Seca1g04972 480 MobiDBLite consensus disorder prediction 118 146 - -
Seca1g04972 480 Pfam AP2 domain 236 286 IPR001471 GO:0003700|GO:0006355
Seca1g04972 480 Pfam AP2 domain 145 193 IPR001471 GO:0003700|GO:0006355
Seca1g04972 480 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04972 Seca-Chr1 152299802 152303267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04972 124 327 AP2-EREBP Transcription Factor Family AT4G36920 78.537 3.20e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Seca1g04972 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04972 K09284 - gmx:100797238 699.893