Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04967 ATGGCGTCAGCAGCTCGCCCTCTCGTCTCTGTTCAAACCCTCGAAGGCAATGCAGCCCCCACCGTTCCACTCCCCGATGTCATGAAGGCCTCCATTCGACCAGACATCGTCAATTTTGTCCACTCCAACATTTCCCGAAACAGTCGCCAACCCTACGCCGTCAGCAGACGCGCCGGCCACCAAACCTCCGCCGAATCCTGGGGCACAGGCCGTGCCGTCTCCCGAATTCCTCGCGTCCCCGGCGGCGGCACACACCGCGCCGGCCAGGCAGCTTTCGGCAACATGTGCCGTGGAGGCCGCATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCATCGCAAGATCAACGTCAACCAGAAGCGCTATGCTGTTGTCTCCGCCATTGCCGCCTCCGCTATCCCCTCCCTCGTCGTAGCGCGCGGCCACCGCATTGAGACGGTGCCAGAGCTCCCTCTCGTGGTTTCCGACTCCGTGGAAAGCGTTGAGAAAAGCAAGGAAGCGATTAACGTTCTGAAGAAAATCGGCGCCTTCGCTGACGCAGAGAAAGCGAAGGATTCTCACGGCATTCGGCCAGGGAAGGGGAAAATGCGTAACAGAAGGTACATTTCACGCAAGGGTCCTCTTATTGTGTACGGAACCGAAGGTGCCAAAGCTGTTAAAGCTTTCAGGAACATTCCAGGTGTTGACGTGGCGAACGTGGATAGGTTGAACCTTCTGAAGTTGGCACCCGGTGGTCACCTTGGGAGGTTCATTATTTGGACCAAGTCTGCGTTTGAGAAGCTGGACTCCATTTATGGGTCGTTCGATAAGGCTTCGGAAAAGAAGAAGGGTTATGTGCTTCCCAGGCCCAAGATGGTGAACTCTGACTTGGGTAGGATTATTAACTCTGATGAGGTTCAGTCTGTGGTGAGGCCCATTAAGAAAGAGGTTAAGAGGGCCACTCTCAAAAAGAACCCACTCAAGAACCTCAATGTTATGTTGAAGCTCAATCCTTATGCCAAGACTGCTAAGAGGATGGCTCTTTTGGCCGAGGCTCAGCGCCTCAAAGCTAAGAAGGAGAAGCTAGATAAGAAGCGCAACACTGTTTCTAAGGAGGAAGCTTCTGCTATCAAGGCTGCTGGAAAAGCATGGTATAAAACCATGGTGTCCGACTCTGATTATGCTGAATTCGACAACTTCTCTAAGTGGTTGGGTATTTCCCAGTGA 1206 0.5381 MASAARPLVSVQTLEGNAAPTVPLPDVMKASIRPDIVNFVHSNISRNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVVARGHRIETVPELPLVVSDSVESVEKSKEAINVLKKIGAFADAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVDVANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKASEKKKGYVLPRPKMVNSDLGRIINSDEVQSVVRPIKKEVKRATLKKNPLKNLNVMLKLNPYAKTAKRMALLAEAQRLKAKKEKLDKKRNTVSKEEASAIKAAGKAWYKTMVSDSDYAEFDNFSKWLGISQ. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04967 401 Pfam Ribosomal protein L4/L1 family 22 262 IPR002136 GO:0003735|GO:0005840|GO:0006412
Seca1g04967 401 FunFam 60S ribosomal protein L4 3 304 - -
Seca1g04967 401 PANTHER 60S RIBOSOMAL PROTEIN L4 4 394 IPR045240 -
Seca1g04967 401 Coils Coil 338 368 - -
Seca1g04967 401 ProSitePatterns Ribosomal protein L1e signature. 116 142 IPR013000 -
Seca1g04967 401 SUPERFAMILY Ribosomal protein L4 8 263 IPR023574 GO:0003735|GO:0005840|GO:0006412
Seca1g04967 401 MobiDBLite consensus disorder prediction 50 87 - -
Seca1g04967 401 MobiDBLite consensus disorder prediction 50 69 - -
Seca1g04967 401 Gene3D - 3 304 IPR023574 GO:0003735|GO:0005840|GO:0006412
Seca1g04967 401 Pfam 60S ribosomal protein L4 C-terminal domain 276 349 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04967 Seca-Chr1 152284749 152286806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04967 2 401 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 80.941 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04967 K02930 - gmx:100796712 702.205