Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04966 ATGAATATTAACACTTCAAGTTCTCCATCAATGGCAATGGCTCCCTCAACTTCCACCAATGGTTCTGGCAAGAAAGTCAGAAAACCTTACACTATTACCAAGTCTAGGGAAAGCTGGTCTGAGGAAGAGCATGACAAGTTTCTAGAAGCTCTTCAACTATTTGACAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCTAAAACGGTTATTCAGATTCGAAGCCATGCCCAAAAATACTTCTTGAAAGTTCAAAAAAGTGGGACAGCAGCACATGTGCCTCCACCTCGTCCTAAGCGCAAAGCTACTCATCCTTACCCACAAAAGGCTTCAAAAAATGTTTTGGTGCCATTGCCAGCATCCATGGCTTATGTGTCTTGTTCCACTAATGCCCTTGCACATGGGTATACCACATGGGATGAAAATTCCATACTCATGAACACTGGATCCCATAAATCCATGTCCTGTCAGGATGAACTCACCAATCTCCATGGAAATGAAGGCATGCACATTTCTTTTTGTTATTCTGATATTGGATCAAAGGGGATAATACGAATTGGCAACAACAGTCTTAATGGTGTTGGGAACTCTGGTAGAAAGCTTCCAGCTTCTGAGATGCCAAAGCAAGGGAAACAGATTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGTTTTATTGGAAGTGTTTTTGATCCAGATACAAAAAACCATATCCACAAGCTTCAGGAAATGGATCCTATAAATTTTGAAACTGCTTTGTTGTTGATGAAAAACCTCACAGTCAACTTGTCTAGCCCTGACTTTGAGCCCGTTGGGAAGGCCTTATCAGTATACGATGTCAATACCAAGACAGTAGGAGTTACTGCAGGAATTGATGCCAAGAAACAGACAAATGATCTATCATGTCAAACCACTTGA 927 0.4099 MNINTSSSPSMAMAPSTSTNGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKSGTAAHVPPPRPKRKATHPYPQKASKNVLVPLPASMAYVSCSTNALAHGYTTWDENSILMNTGSHKSMSCQDELTNLHGNEGMHISFCYSDIGSKGIIRIGNNSLNGVGNSGRKLPASEMPKQGKQIPVLHGLPDFAEVYSFIGSVFDPDTKNHIHKLQEMDPINFETALLLMKNLTVNLSSPDFEPVGKALSVYDVNTKTVGVTAGIDAKKQTNDLSCQTT. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04966 308 ProSiteProfiles Myb-like domain profile. 31 81 IPR001005 -
Seca1g04966 308 MobiDBLite consensus disorder prediction 87 107 - -
Seca1g04966 308 Gene3D - 39 86 - -
Seca1g04966 308 SUPERFAMILY Homeodomain-like 30 86 IPR009057 -
Seca1g04966 308 PANTHER SWI/SNF COMPLEX-RELATED 9 267 - -
Seca1g04966 308 MobiDBLite consensus disorder prediction 1 26 - -
Seca1g04966 308 MobiDBLite consensus disorder prediction 1 38 - -
Seca1g04966 308 NCBIfam myb-like DNA-binding domain, SHAQKYF class 34 83 IPR006447 GO:0003677
Seca1g04966 308 ProSiteProfiles SANT domain profile. 34 85 IPR017884 -
Seca1g04966 308 CDD SANT 38 81 IPR001005 -
Seca1g04966 308 SMART sant 35 83 IPR001005 -
Seca1g04966 308 FunFam protein REVEILLE 6 isoform X1 38 86 - -
Seca1g04966 308 Pfam Myb-like DNA-binding domain 36 81 IPR001005 -
Seca1g04966 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 85 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04966 Seca-Chr1 152279540 152283962 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca1g04966 Myb_DNA-binding 1.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04966 - - gmx:100783482 482.641