Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04964 ATGTGGGGATTATATAGATCTTGTTTGAGAAGAAGAGAAAGGAAAGGGAAAATGTCGGGGCAAACACAGCGTCTGAATGTGGTCCCCACAGTGACGATGCTGGGAGTGGTGAAAGCTCGTTTGGTGGGAGCTACAAGAGGTCATGCCCTTCTGAAGAAGAAGAGTGATGCTCTCACCGTGCAGTTCAGGCAGATCCTGAAGAAGATTGTGTCCACCAAGGAATCAATGGGTGACATCATGAAAACCTCTTCTTTTGCCTTGACTGAGGCCAAGTATGTTGCTGGTGACAACATCAAGCATGTTGTGCTTGAGAATGTTAAAGAAGCTTCCCTCAGAGTCCGCTCTCGCCAGGAGAATGTTGCCGGAGTTAAGCTTCCCAAGTTTGATTACACTGCAGATGGTGAGGCCACCAAGAATGACCTCACTGGATTGGCAAGGGGTGGCCAGCAGGTGCAGCAGTGCCGTGCTGCTTACATCAAGGCAATTGAGGTTCTTGTTGAGCTTGCTTCCCTTCAAACCTCTTTCCTCACCCTTGATGAGGCCATCAAGACCACCAACCGTAGGGTCAATGCTCTTGAGAATGTCGTCAAGCCGAGGCTTGAGAACACCATTAGTTACATCAAGGGTGAGTTGGATGAGCTTGAGAGAGAGGATTTCTTTAGGTTGAAGAAGATTCAGGGATATAAGAAGAGGGAAATTGAGAGGCAGATGCAGTTGCAGGCTGCCAATGAACAGCTTGGTGACAAATTCCCCTTGCACAAAGGGGTTTCCTTCAATTCTCAAAACTTGTTGTCTGTGGCAGCTAACAAAGATGATGATATCATTTTCTGA 831 0.4741 MWGLYRSCLRRRERKGKMSGQTQRLNVVPTVTMLGVVKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGDIMKTSSFALTEAKYVAGDNIKHVVLENVKEASLRVRSRQENVAGVKLPKFDYTADGEATKNDLTGLARGGQQVQQCRAAYIKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELEREDFFRLKKIQGYKKREIERQMQLQAANEQLGDKFPLHKGVSFNSQNLLSVAANKDDDIIF. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04964 276 Pfam ATP synthase subunit D 35 226 IPR002699 GO:0046961
Seca1g04964 276 Gene3D - 16 216 - -
Seca1g04964 276 PANTHER V-TYPE ATP SYNTHASE SUBUNIT D 18 276 IPR002699 GO:0046961
Seca1g04964 276 FunFam V-type proton ATPase subunit D 18 216 - -
Seca1g04964 276 Coils Coil 197 217 - -
Seca1g04964 276 NCBIfam V-type ATP synthase subunit D 26 230 IPR002699 GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04964 Seca-Chr1 152262021 152262851 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04964 18 276 Primary Pumps ATPases(2) AT3G58730 78.626 7.23e-148 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04964 K02149 - gmx:100808847 445.662