Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04959 ATGAAGTCTACTTACATTGGACTTGTTCTTGATCGGGGAGAGAAGATTGAGGTTTTGGTGGATAAAACTGAGAACCTTCACAATCAGATAGTGATGGTTGCGATATCTTGTTTGAGAAGAAGAGAAAAGAAAGGAAAAATGTCGGGACAAACACAACGTCTGAATGTGGTCCCCACAGTGACGATGCTGGGAGTGGTGAAAGCTCGTTTGGTGGGAGCGACAAGAGGTCACGCGCTTCTGAAGAAGAAGAGCGATGCTCTCACTGTGCAGTTCAGGCAGATCCTGAAGAAGATTGTGTCCACCAAGGAATCAATGGGTGACATCATGAAGACCTCTTCTTTCGCCTTGACTGAGGCCAAGTATGTTGCTGGTGACAACATCAAGCATGTTGTGCTTGAGAATGTTAAAGAAGCTTCCCTCCGAGTCCGCTCTCGCCAGGAGAATGTTGCCGGAGTTAAGCTTCCCAAGTTTGATTACACTGCAGATGGTGAGGCCACCAAGAATGACCTCACTGGATTGGCAAGGGGTGGCCAGCAGGTGCAGCAGTGCCGTGCTGCTTACATCAAGGCAATTGAGGTTCTTGTTGAGCTTGCTTCCCTTCAAACCTCTTTCCTCACCCTTGATGAGGCCATCAAGACCACCAACCGTAGGGTCAATGCTCTTGAGAATGTCGTCAAGCTGAGGCTTGAGAACACCATTAGTTACATCAAGGGTGAGTTGGATGAGCTTGAGAGAGAGGATTTCTTTAGGTTGAAGAAGATTCAGGGATATAAGAAGAGGGAAATTGAGAGGCAGATGCAGTTGCAGGCTACAAAGGAACAGCTTGGTGACAAATTCCCCTTGCACAAAGGGGTTTCCTTCAATTCTCAAAACTTGTTGTCTGTGGCAGACAAGGATGATGATATCATTTTCTAA 915 0.4678 MKSTYIGLVLDRGEKIEVLVDKTENLHNQIVMVAISCLRRREKKGKMSGQTQRLNVVPTVTMLGVVKARLVGATRGHALLKKKSDALTVQFRQILKKIVSTKESMGDIMKTSSFALTEAKYVAGDNIKHVVLENVKEASLRVRSRQENVAGVKLPKFDYTADGEATKNDLTGLARGGQQVQQCRAAYIKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKLRLENTISYIKGELDELEREDFFRLKKIQGYKKREIERQMQLQATKEQLGDKFPLHKGVSFNSQNLLSVADKDDDIIF. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04959 304 FunFam V-type proton ATPase subunit D 47 245 - -
Seca1g04959 304 PANTHER V-TYPE ATP SYNTHASE SUBUNIT D 47 304 IPR002699 GO:0046961
Seca1g04959 304 Gene3D - 45 245 - -
Seca1g04959 304 NCBIfam V-type ATP synthase subunit D 55 259 IPR002699 GO:0046961
Seca1g04959 304 Pfam ATP synthase subunit D 64 255 IPR002699 GO:0046961
Seca1g04959 304 Coils Coil 226 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04959 Seca-Chr1 152238646 152244732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04959 47 304 Primary Pumps ATPases(2) AT3G58730 77.481 2.68e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04959 K02149 - gmx:100808847 446.817