Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04954 ATGATGGATATTCAGGAAGCAGAAAGGGTGGTTGTTGCCAAACCAGTTGCTTCAAGGCCTAGTTGTTCTACTTTCAAATCTTTCTCAGAGCTCTTAGCAGGTGCAATCAATGCCTCTCCCCCTATTGTATCTCCTCAAACTACAGTTTCTGCCATTAGGCCAAAGACAGTGAGGTTCAAGCCAGCTGTGAATAGCTCCCCTGCTGGGTCTGTTTCTTCTCAGGCTGACATTTCTGGTGCTGCACTTAACAATTCTTTTGACATGTGTCCTAAACCTGACACCATGCAGTCCCTCATATACAAACCAATGCCAAAACTTGTGTCAAAAACAACTGTTTCTCTTTTGGCAAATATGGGGAATTGCAAAACTAGTCAGCAACAACCAAAGCAATCAATGGAGGCCAATCTTCATCATGCTAACCATGAAAAATTTAGAACCAATATGAGCTCAAATCTTCATCAGAACATCACCCCACATGCTGAAACATATCAGAACACTGAACCTTGTAAGATGGTACAACAGAACCTTGAAGAGGATCAAAAGGCTTTAACATCTACTATTAATGGTGATAGACCTTCTTATGATGGGTATAATTGGAGGAAATATGGGCAGAAGCAAGTAAAAGGAAGTGAATACCCAAGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAAGTTGAAAGATCATTTGATGGACAAATTGCAGAAATTGTATACAAAGGTGAGCACAATCATCCAAAACCACAGCTTCCTAAGCGCAACTCAACAGGGACACAAGGTTCAGGAATGATGTCTGATGGAATAGCTCAAGATATATGGAGTAATAATAATCACAGTGAGAGGAATGAAGGTAGAATAGAGAACCAGAATGACACAGGACTATCTGTGCATTCAGCTTATCATGTCAAGGCTCCACAGGCTAATGATTCTATTCTAATTGGTGCAAATAATGCTGGTGGAGGAAACTTAGAAAATTCTTGCGGTCTAAGTGGGGAATGTGATGAAGGAAGCAAGGGATTTGAGGCAGAGGAAGATGAACCCAGAAGTAAAAGAAGGAAAAATGAGAATCAATCCAATGAAGCAGCTGTATCAGAGGAAGGTTTAGCAGAGCCACGCGTTGTGACACAAAGTTCTATTGATTCTGAAATACTTGGAGATGGCTTTCGCTGGAGGAAATATGGTCAGAAGGTGGTGAAGGGAAATCCATATCCCAGAAGCTACTATAGATGCACTAATATCAAGTGTAACGTTCGCAAACATGTGGAGAGAGCAATAGATGACCCGAAATCATTTGTGACTACATATGAGGGAAAGCACAACCATGAGATGCCACTCAAGAACACAGCAAGTGTGGCCTCTGAGAAAGATTCACAGGCTTCTCTTAGTAAAGATAAACCATAG 1413 0.4105 MMDIQEAERVVVAKPVASRPSCSTFKSFSELLAGAINASPPIVSPQTTVSAIRPKTVRFKPAVNSSPAGSVSSQADISGAALNNSFDMCPKPDTMQSLIYKPMPKLVSKTTVSLLANMGNCKTSQQQPKQSMEANLHHANHEKFRTNMSSNLHQNITPHAETYQNTEPCKMVQQNLEEDQKALTSTINGDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHPKPQLPKRNSTGTQGSGMMSDGIAQDIWSNNNHSERNEGRIENQNDTGLSVHSAYHVKAPQANDSILIGANNAGGGNLENSCGLSGECDEGSKGFEAEEDEPRSKRRKNENQSNEAAVSEEGLAEPRVVTQSSIDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPKSFVTTYEGKHNHEMPLKNTASVASEKDSQASLSKDKP. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04954 470 SUPERFAMILY WRKY DNA-binding domain 383 448 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g04954 470 Gene3D WRKY domain 373 449 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g04954 470 Gene3D WRKY domain 177 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g04954 470 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 130 463 IPR044810 GO:0003700
Seca1g04954 470 FunFam WRKY transcription factor 176 253 - -
Seca1g04954 470 FunFam WRKY transcription factor 376 449 - -
Seca1g04954 470 MobiDBLite consensus disorder prediction 254 273 - -
Seca1g04954 470 ProSiteProfiles WRKY domain profile. 195 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g04954 470 MobiDBLite consensus disorder prediction 441 470 - -
Seca1g04954 470 ProSiteProfiles WRKY domain profile. 383 448 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g04954 470 MobiDBLite consensus disorder prediction 336 377 - -
Seca1g04954 470 Pfam WRKY DNA -binding domain 195 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g04954 470 Pfam WRKY DNA -binding domain 390 446 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g04954 470 SUPERFAMILY WRKY DNA-binding domain 191 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca1g04954 470 SMART WRKY_cls 388 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g04954 470 SMART WRKY_cls 193 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca1g04954 470 MobiDBLite consensus disorder prediction 244 273 - -
Seca1g04954 470 MobiDBLite consensus disorder prediction 345 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04954 Seca-Chr1 152183107 152188946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04954 93 449 WRKY Transcription Factor Family AT2G37260 45.067 2.10e-89 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca1g04954 WRKY 6.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04954 - - gmx:100794069 753.821