Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04953 ATGGGTTGGATTCCCTGTTCTGGAAATTCAGGCACTAAGAAGAAGATTGAGAAGATGGAAGTGCAGGACAGCCTCGTTGGTCAGATCAAAGCCACCCCAGGGAAGTTGAAGAGGAATTCATCCACAAATTCCAAAGATACATCAAAAAATGGGAACCCTGATCACATTGCAGCACAGACTTTCTCATTCCGGGAGTTAGCAACTGCAACTAGGAATTTTAGAGCAGAATGTCTTTTGGGTGAGGGAGGCTTTGGTAGAGTGTACAAAGGGCGTCTGGAAAGTATTAATCAGGTTGTCGCAATTAAGCAACTTGACCGAAATGGACTGCAAGGGAATAGGGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCACCCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATCCTTGGAAGATCACTTGCACGATATTGCTCCTGGAAAGAAACGACTTGACTGGAATACACGAATGAAAATTGCTGCTGGGGCAGCAAAGGGATTGGAATATCTTCATGACAAAGCTAATCCTCCAGTCATATACCGAGATTTAAAGTGCTCCAACATTTTGCTTGGTGAAGGGTATCACCCAAAGTTATCTGATTTTGGTTTAGCAAAACTTGGCCCAGTTGGAGAAAACACCCATGTATCAACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCAATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTGTTTAAAGATAGAAGAAAATTTTCACAAATGGCTGATCCAATGCTCCAAGGTCAATACCCTCCAAGAGGGCTATACCAGGCCCTAGCTGTTGCAGCAATGTGTGTTCAGGAACAGGCTAATATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGTCTTACCTTGCTTCACAAAGATATGATCCAAATACACAGACAGTCCAAAGCTCTCGCCTTGCTCCTGGTACACCTCCTAGAATCAGGAGGGGGCAATGA 1140 0.4298 MGWIPCSGNSGTKKKIEKMEVQDSLVGQIKATPGKLKRNSSTNSKDTSKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIAPGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYDPNTQTVQSSRLAPGTPPRIRRGQ. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04953 379 MobiDBLite consensus disorder prediction 360 379 - -
Seca1g04953 379 MobiDBLite consensus disorder prediction 34 55 - -
Seca1g04953 379 FunFam Serine/threonine-protein kinase PBS1 150 365 - -
Seca1g04953 379 Gene3D Transferase(Phosphotransferase) domain 1 150 368 - -
Seca1g04953 379 MobiDBLite consensus disorder prediction 32 55 - -
Seca1g04953 379 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Seca1g04953 379 FunFam Serine/threonine-protein kinase PBS1 45 149 - -
Seca1g04953 379 CDD STKc_IRAK 79 347 - -
Seca1g04953 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Seca1g04953 379 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04953 379 SUPERFAMILY Protein kinase-like (PK-like) 55 347 IPR011009 -
Seca1g04953 379 Pfam Protein tyrosine and serine/threonine kinase 77 346 IPR001245 GO:0004672|GO:0006468
Seca1g04953 379 SMART serkin_6 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04953 379 Gene3D Phosphorylase Kinase; domain 1 42 149 - -
Seca1g04953 379 PANTHER OS07G0668900 PROTEIN 23 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04953 Seca-Chr1 152169090 152172590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04953 33 352 Glycoside Hydrolase AT3G07070 68.438 8.35e-165 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca1g04953 PK_Tyr_Ser-Thr 5.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04953 - - gmx:100818024 729.554