Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04952 ATGCAAGAAATTCGTCCTCCCACGGTGTCTCCCACCTCCGAACCACCACCTCTCTTTGATGGAACTACCAGATTGTACATGAGTTACTCATGCCCATTTGCACAACGCGTATGGATCACTAGGAACCACAAGGGATTGCAACACAAGATCAAATTGGTTCCTATTGACCTTCAAAACAAACCTGCTTGGTACAAAGAGAAGGTCCACCCGGAAAATAAGGTACCATCTCTGGAACATGATGGCAAGGTTTTAGCAGAAAGTATTGACTTGATCAAATACTTAGATGCAACTTTTGATGGGCCATCACTAATGCCTGATGACCCTGCTAAGAAGGAATATGGTGAGGAGCTGATAAAGTATGTTGATACTTTTACCAAAGATTTGTTCAGTTCGTTCAGGGGCGATCCCATAACACAAACGAGTGCTTCATTTGACTATGTGGAGAATGCTCTTGGTAAATTTGATGATGGGCCCTTCTTCCTTGGCGAATTTAGTTTGGGACTACAAGACAAGATCAAACTAGTTCCTATTGACCTTCTAAACAGGCCTGCTTGGTATAAGGAGAAAGTCTACCCTGAAAACAAGGTGCCTTCGTTGGAACACAATGGGAAGGTCTTGGGAGAAAGTCTTGATTTGATCAATTATGTAGATGTTAACTTCGAAGGGCCATCTCTATTTCCCAGTGATCCTGCCAAGAAAGAGTTTGGTGAGCAGTTGATTTCTCATGTTGATACATTCATCAAAGACCTCTACTCTTCATTGAAAGGAGATCATCCTATACAACAAGCCAGTTCTGCCTTTGATTACCTGGAGAATACTCTTGGTAAATTTGATGATGGGCCATTCCTTCTTGGTCACTTTAGTTGGGTGGATATTGCCTATATTCCATTTGTGGAAAGATTCCATATCGTTTTTGCTGAGGTGTTCAAGCATGATATAACAGAAGGAAGGCCTAAACTTGCAGCATGGATTGAGGAGGTGAACAAGATTGATGCTTATACACAGACCAGAATTGATCCTAAAGAAATCGTTGATATTTTCAAGAAACGTTTTTTGGTACTATAG 1065 0.4131 MQEIRPPTVSPTSEPPPLFDGTTRLYMSYSCPFAQRVWITRNHKGLQHKIKLVPIDLQNKPAWYKEKVHPENKVPSLEHDGKVLAESIDLIKYLDATFDGPSLMPDDPAKKEYGEELIKYVDTFTKDLFSSFRGDPITQTSASFDYVENALGKFDDGPFFLGEFSLGLQDKIKLVPIDLLNRPAWYKEKVYPENKVPSLEHNGKVLGESLDLINYVDVNFEGPSLFPSDPAKKEFGEQLISHVDTFIKDLYSSLKGDHPIQQASSAFDYLENTLGKFDDGPFLLGHFSWVDIAYIPFVERFHIVFAEVFKHDITEGRPKLAAWIEEVNKIDAYTQTRIDPKEIVDIFKKRFLVL. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04952 354 Gene3D Glutaredoxin 1 99 - -
Seca1g04952 354 Gene3D Glutaredoxin 169 221 - -
Seca1g04952 354 FunFam Glutathione S-transferase L2, chloroplastic 1 99 - -
Seca1g04952 354 CDD GST_C_Lambda 229 348 - -
Seca1g04952 354 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 21 102 IPR004045 -
Seca1g04952 354 PANTHER GLUTATHIONE S-TRANSFERASE L1 167 351 IPR044629 GO:0004364
Seca1g04952 354 FunFam Lambda class glutathione S-transferase 222 354 - -
Seca1g04952 354 Pfam Glutathione S-transferase, N-terminal domain 25 101 IPR004045 -
Seca1g04952 354 Pfam Glutathione S-transferase, N-terminal domain 171 223 IPR004045 -
Seca1g04952 354 Gene3D - 100 168 - -
Seca1g04952 354 Gene3D - 222 354 - -
Seca1g04952 354 SUPERFAMILY GST C-terminal domain-like 220 351 IPR036282 -
Seca1g04952 354 SUPERFAMILY Thioredoxin-like 171 224 IPR036249 -
Seca1g04952 354 SUPERFAMILY Thioredoxin-like 14 103 IPR036249 -
Seca1g04952 354 Pfam Glutathione S-transferase, C-terminal domain 261 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04952 Seca-Chr1 152161591 152167933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04952 167 352 Glutathione S-transferase Gene Family AT5G02790 68.280 4.37e-91 271