Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04949 ATGGTTAGATCCTGCTGGAAACCAACTGTTGAGGGTGATGATGGTGATGTGAGTGGGAGAGTTGATGGGTTGCTATGGTACAAGGATTTGGGGAACCATCTTTATGGGGAATTCTCAATGGCTGTAATTCAAGCCAATAGTTCTTTGGAGGATCGTAGCCAACTTGAATCTGGACCTTTGAGTTCTGACTATTTAGGTCCTCAAGGGACCTTTATAGGTGTATATGATGGTCATGGTGGAACTGCAGCCTCACAGTTTGTCACTGACAATCTTTTCAGCAATTTCAAGAGCTTTGCTGCTGAACATCAAGGTATTTCAGAGAAGGTTATCAGAAAGGCCTTTGTGGCAACAGAAGATGGGTTTCTCTCTCTTGTCAAGAAACAGTGGTTAAGCAAGCCACAGATTGCATCAGCGGGTACATGTTGTTTGGCTGGGATAATTTGCAATGGTATGTTATATGTTGCAAATGCAGGAGACTCAAGGGTGGTGTTAGGAAGAATGGAGAGAGCAACAAGGGAAACATTAGCTATTCAATTGTCTGCAGAACACAACGTTAACATAGAGACTGAGAGAGATGAACTTCGGTCAAAGCACCCCTATGATTCACAAATAGTGGTTATGAAACACAATGTTTGGCGTGTGAAAGGACTCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGCAGAATTTAACAAGGAGCCTCTACCATATAAATTCAGACTACCTGAAACCTTCTTCAAACCAATTCTTAGTTGTGAACCATCAATATCAATGCATAAACTGCATCCTGATGATCAATTTCTCATCTTTGCTTCTGATGGTTTATGGGAGCAGCTCAGCAATCAAGAGGCTGTTGATATAGTCAGCAATAACCCACGCAATGGAATTGCTAGGAGGCTTGTGAAAGCTACACTTAGAGAAGCAGCTAAGAAGAGAGAAATGAGATTCTCAGATCTCCAAAAGATTGAACAAGGTGTAAGGAGACACTTCCATGATGATATTACAGTAATTGTTGTATTTCTAAATCCCAAATTGATTGATAATAGCTCTCTCTGGGGTTCTCCACTTTCAATCAGAGGAGGTGGGCATGCAAATTCTTAG 1113 0.4124 MVRSCWKPTVEGDDGDVSGRVDGLLWYKDLGNHLYGEFSMAVIQANSSLEDRSQLESGPLSSDYLGPQGTFIGVYDGHGGTAASQFVTDNLFSNFKSFAAEHQGISEKVIRKAFVATEDGFLSLVKKQWLSKPQIASAGTCCLAGIICNGMLYVANAGDSRVVLGRMERATRETLAIQLSAEHNVNIETERDELRSKHPYDSQIVVMKHNVWRVKGLIQVSRSIGDAYLKKAEFNKEPLPYKFRLPETFFKPILSCEPSISMHKLHPDDQFLIFASDGLWEQLSNQEAVDIVSNNPRNGIARRLVKATLREAAKKREMRFSDLQKIEQGVRRHFHDDITVIVVFLNPKLIDNSSLWGSPLSIRGGGHANS. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04949 370 Gene3D - 28 354 IPR036457 -
Seca1g04949 370 CDD PP2Cc 35 345 IPR001932 -
Seca1g04949 370 SUPERFAMILY PP2C-like 46 346 IPR036457 -
Seca1g04949 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 345 IPR001932 -
Seca1g04949 370 FunFam Phosphatase 2C family protein 26 355 - -
Seca1g04949 370 SMART PP2C_4 31 343 IPR001932 -
Seca1g04949 370 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Seca1g04949 370 PANTHER PROTEIN PHOSPHATASE 35 343 IPR015655 GO:0004722|GO:0006470
Seca1g04949 370 Pfam Protein phosphatase 2C 68 314 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04949 Seca-Chr1 152142964 152145750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04949 1 366 PP2C-type Phosphatase Gene Family AT3G12620 67.751 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04949 K01102 - gmx:100819870 622.854