Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04940 ATGGGGAAGGGAGGCCAAGATTATGGGAGAAAAGAGAACACGAGTTCTGAGTCTTCGGACCGTGAAATCTTCAAGGCGTGGTCCAAGGACGTGCGTGAATGCGAGGAACACTTTAAGGTGAGAGTGAAAACGGGGTTGAATCACGACGAGGTTGAGAATCGGCGCAAGATCTATGGCTCGAACGAATTGGAGAAGCACGACGGACAGTCTATTTGGAGTTTGATTCTGGAACAGTTCAATGACACGTTGGTTCGGATTCTTCTCGCCGCCGCTATCATCTCCTTCGTACTTGCTTGGTACGATGGCGAAGAAGGTGGCGAGATGGAGATTACGGCTTTTGTGGAGCCTCTGGTGATATTCCTGATATTGATTGTGAATGCAATCGTTGGGGTATGGCAAGAGAGCAATGCGGAGAAGGCACTTGAGGCGTTGAAGGAGATTCAATCGGATCACGCCATGGTGATTCGAGATAGCGTGAAAATCCCTAATTTGCCGGCCAAGGATCTTGTGCCTGGTGATATTGTGGAGCTTAAGGTTGGCGATAAGGTGCCTGCAGATATGCGGGTTGTGGCATTGATTAGCTCCACTTTGCGATTGGAGCAGGGTTCTTTGACTGGAGAGAGTGAAGCAGTGAATAAGACTAACAAGCCTGTTCCTGAGGATGCTGATATTCAAGGCAAGAAGTGTATGGTTTTCGCGGGGACGACTGTTGTTAACGGGAACTGCATTTGCTTGGTCACACAGACCGGCATGGATACCGAGATTGGGAATGTGCATAAGCAGATACACGTAGCGTCGCAGAGTGAGGATGATACCCCCTTGAAGAAGAAGCTCAATGAGTTCGGAGAGAATCTAACCATTATAATTGGGTTGATATGTGCTTTGGTTTGGCTCATCAATGTTAAGTACTTCCTGACCTGGGAGTATGTGGATGGGTGGCCAAGGAACTTCAAGTTTTCATTTGAGAAGTGTACGTATTACTTTGAGATTGCTGTGGCATTGGCTGTGGCTGCCATTCCAGAGGGTTTGCCTGCAGTCATCACGACTTGCCTCGCACTAGGTACTCGAAAGATGGCCCAGAAGAATGCCCTGGTTCGGAAGCTACCAAGCGTGGAAACTCTGGGTTGTACAACTGTGATTTGTTCAGATAAAACTGGTACTTTGACTACGAACCAGATGTCTGTGACAAAACTAGTAGCTATTGGCCATAATGTAGACACGCTGCGAGCCTTCAAGGTGGAAGGAACTACTTACAATCCATCTGATGGTAAAATAGAGAACTGGGTAACAGGTGGATTGGATGCTAATCTTCAGATGATCGCAAAAATAGCTGCTGTCTGTAATGATGCTGGAGTCACACAGTCAGAGCATAAGTTTGTTGCCCATGGAATGCCTACTGAAGCAGCCTTAAAGGTTTTGGTAGAGAAGATGGGTCTTCCTGAAGGATCTAATGATGCACGATCAGCAAGCAAGAATACCTTACTACATTTACTTTCAAATTTTAATTCAGGTTGTTGTGAATGGTGGAATGAACATGACCGGCGGATTGCAACTCTTGAGTTCGACCGTGATAGGAAGTCAATGGGCGTTATTGTGGACTCTGGTCCAGGGAAAAAGTCGCTTCTGGTCAAGGGTGCTGTAGAAAATGTATTGGAAAGAAGCTCTAAAATTCAGTTGCGTGACGGTTCTGTTGTGAATCTGGACAATAATGCAAGGAACCTCATATTACAAGCTCTTCATGAAATGTCAACTAGTGCGTTACGCTGTTTGGGTTTTGCTTACAAGGATGAGCTCAGTGCATTTGAAAACTACAATGGTAATGATGATCATCCAGCCCACCAGCTTTTGCTTAATCCTTCCAACTATTCATCAATTGAAAGTGAACTTATTTTTGTTGGCTTGGTTGGATTGAGGGATCCTCCTAGGGAGGAGGTATACCAAGCAATCGAAGACTGCAGAGCAGCTGGAATTCGTGTTATAGTTATAACTGGAGACAATAAGAACACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTGAACCCAATGAAGACATTAGTTCAAAAAGTGTAACTGGTAGAGATTTTATGGAGGTGCGTGATAAAAAAGCCTATTTGAGACAGAGTGGTGGGCTTTTGTTTTCGAGGGCTGAACCTAGGCATAAGCAAGATATTGTGAGGCTGCTCAAAGAGGAAGGGGAGGTGGTGGCCATGACTGGGGATGGCGTTAATGATGCGCCTGCCTTGAAGCTTGCAGACATTGGTGTGGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTACTGGCAGATGATAATTTCAGTACCATTGTAGCTGCTGTTGGTGAAGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGATACATGATCTCTTCCAATATTGGTGAGGTTGCTTCTATATTTCTAACAGCTGCACTAGGTATTCCTGAAGGATTGATACCTGTCCAGCTTCTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACGGCTTTGGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCACTAATTAATTTGTGGATTTTATTCCGCTATCTGGTTATTGGGATTTATGTTGGATTAGCTACGGTTGGTGTTTTCATTATATGGTATACACATGGTTCCTTCTTGGGTATTGACCTTAGCGGGGATGGGCATACACTCGTCACTTACTCCCAACTTGCCAACTGGGGTCAGTGCTCCTCGTGGAAGAATTTCACTGCTTCTCCCTTCACTGCTGGTGCTAGAACTATTTCTTTTGATAATGATCCCTGTGACTACTTCCAGACTGGTAAAGTGAAAGCTATGACACTGTCTCTCTCTGTGTTGGTAGCCATCGAAATGTTCAACTCTCTTAATGCCCTATCTGAAGATGGAAGTCTTTTGACAATGCCCCCTTGGGTCAACCCTTGGCTTCTTTTGGCAATGTCTGTGTCATTTGGTCTGCACTTTTTGATCTTGTATGTGCCATTCTTAGCACAAGTATTTGGCATTGTGCCCCTGAGCTTCAATGAGTGGCTTTTGGTTTTGGCTGTTGCATTGCCCGTCATTCTAATTGATGAGATTCTGAAATTTGTGGGGAGGTGTACGAGTAGATCTCAAGCATCAAGTGCAAGAAGATCAAAGCAAAAATCAGAGTAG 3213 0.4497 MGKGGQDYGRKENTSSESSDREIFKAWSKDVRECEEHFKVRVKTGLNHDEVENRRKIYGSNELEKHDGQSIWSLILEQFNDTLVRILLAAAIISFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSDHAMVIRDSVKIPNLPAKDLVPGDIVELKVGDKVPADMRVVALISSTLRLEQGSLTGESEAVNKTNKPVPEDADIQGKKCMVFAGTTVVNGNCICLVTQTGMDTEIGNVHKQIHVASQSEDDTPLKKKLNEFGENLTIIIGLICALVWLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTKLVAIGHNVDTLRAFKVEGTTYNPSDGKIENWVTGGLDANLQMIAKIAAVCNDAGVTQSEHKFVAHGMPTEAALKVLVEKMGLPEGSNDARSASKNTLLHLLSNFNSGCCEWWNEHDRRIATLEFDRDRKSMGVIVDSGPGKKSLLVKGAVENVLERSSKIQLRDGSVVNLDNNARNLILQALHEMSTSALRCLGFAYKDELSAFENYNGNDDHPAHQLLLNPSNYSSIESELIFVGLVGLRDPPREEVYQAIEDCRAAGIRVIVITGDNKNTAEAICREIGVFEPNEDISSKSVTGRDFMEVRDKKAYLRQSGGLLFSRAEPRHKQDIVRLLKEEGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYLVIGIYVGLATVGVFIIWYTHGSFLGIDLSGDGHTLVTYSQLANWGQCSSWKNFTASPFTAGARTISFDNDPCDYFQTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLAVALPVILIDEILKFVGRCTSRSQASSARRSKQKSE. 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04940 1070 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Seca1g04940 1070 Pfam Cation transporting ATPase, C-terminus 824 1050 IPR006068 -
Seca1g04940 1070 Gene3D - 378 784 IPR023214 -
Seca1g04940 1070 NCBIfam HAD-IC family P-type ATPase 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca1g04940 1070 NCBIfam HAD-IC family P-type ATPase 713 820 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca1g04940 1070 NCBIfam HAD-IC family P-type ATPase 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca1g04940 1070 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 637 IPR023299 GO:0000166
Seca1g04940 1070 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Seca1g04940 1070 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 237 411 - -
Seca1g04940 1070 Pfam haloacid dehalogenase-like hydrolase 378 753 - -
Seca1g04940 1070 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1053 IPR023298 -
Seca1g04940 1070 FunFam Calcium-transporting ATPase, putative 127 263 - -
Seca1g04940 1070 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 803 1057 - -
Seca1g04940 1070 SFLD Haloacid Dehalogenase 362 791 - -
Seca1g04940 1070 MobiDBLite consensus disorder prediction 1 22 - -
Seca1g04940 1070 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 391 640 - -
Seca1g04940 1070 SUPERFAMILY Calcium ATPase, transduction domain A 150 260 IPR008250 -
Seca1g04940 1070 Gene3D - 77 1052 - -
Seca1g04940 1070 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Seca1g04940 1070 Pfam E1-E2 ATPase 147 361 - -
Seca1g04940 1070 SFLD p-type atpase 362 791 IPR044492 -
Seca1g04940 1070 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1062 - -
Seca1g04940 1070 Gene3D - 44 265 - -
Seca1g04940 1070 Gene3D - 391 640 IPR023299 GO:0000166
Seca1g04940 1070 SUPERFAMILY HAD-like 379 843 IPR036412 -
Seca1g04940 1070 PRINTS P-type cation-transporting ATPase superfamily signature 763 775 - -
Seca1g04940 1070 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Seca1g04940 1070 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Seca1g04940 1070 PRINTS P-type cation-transporting ATPase superfamily signature 739 758 - -
Seca1g04940 1070 PRINTS P-type cation-transporting ATPase superfamily signature 655 665 - -
Seca1g04940 1070 PRINTS P-type cation-transporting ATPase superfamily signature 633 644 - -
Seca1g04940 1070 FunFam Calcium-transporting P-type ATPase, putative 635 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04940 Seca-Chr1 152070682 152076586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04940 1 1070 Primary Pumps ATPases(2) AT1G07670 80.205 0.0 1748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04940 K01537 - gmx:100788807 1929.45