Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04907 ATGATGCCAAAGGAAACCTTTAAACGGGAAAGGAAAAAGGTGGTGAAATGTCTTGATCAGAGACGGTGTGTGAATAACAGAAGCTTAAAATCTGGTCGCAGGAAGTCTCGATCTTCTTATTCCCCAGACATAGAAGATGATGAGTCTTCTTCACCAGACTTAAATACAATTCAAAATAAAGTGAAGATCAATCTTGAAGAGGATTCACCCAAGCAAGAAGTTCTGCCACCTGAATCTTTAACTGAGTTCCTCAGAGATACTAGTGTAGTTACTGTAGATGCTGTGGATGTGGCAAATGAAAATGCAGCTGGGTTATCAGAATCTTCTAATAAGGTGCTTCCTGGGTTATCTTCTTGTGTTTTGACGAAAGGTGACACTAATGCTGTTGACAAAGATATAATGCAGCAGGAGCTATCTGTTGGGTCTTCCAGTAGAAATCCAGTCTCACCTATACCTGGACTTGATTCTTCATGCTGTAAAGATGCAGATCAACCCAGTCCAGTCTCAGTCCTAGAACCTTCTTTTACTGATGATCTGTCATCTTGTTCTGAATGTTTTGAAAGTCTCAGTGTTGACCTACAAGGGCTTCGAATGCAACTTCAATTGCTGAAGTTGGAATCTGAAGAATACGTAGAAGGATCCATGCTAATTTCAAGTGACGAAGATTGTGGGGAAGCATCTACGGGCATTTTAGAAGACAATGGATTATGTAGAAATGAAGATAACTGGGAGTCTTCCTACATGATTGATGTCTTGTCTGAATCTGGTATTGATAGAGCTCAGCCTGAAGCATTTTTGGAAGTTTGGCATTCTCCAGAATGCCCTGTTAGTCTTTCAGTGTTTGATGAACTTGAAAAGAGGTACTCTGATTGGACTACCTGCACAAGGTCCCAAAGGAGATTGCTTTTTGACCGAATAAATTCTGGAATTGTCAATGTACGTGAGCAATTCATGAGTGCACAGCCATGGGTAAGGCCCACAGGCACAAATTTATGTTCTAAATTGACCAAAAATGTGCTCCAAGATTGTTTGTACAGGATGCTGGGGAGCCAAGGAAAAGTAAAGGATACTGCTCTGGGGAAGGTGCTGGTGAGCCAATTGCAGTGGTTGAACTTAAGAGATGACATCGATTTTATAGGTAAGGAAGTTGAGAGCTTGTTATTTGATGATCTAGTGGCAGAGATAGCCGGCACATAG 1197 0.4127 MMPKETFKRERKKVVKCLDQRRCVNNRSLKSGRRKSRSSYSPDIEDDESSSPDLNTIQNKVKINLEEDSPKQEVLPPESLTEFLRDTSVVTVDAVDVANENAAGLSESSNKVLPGLSSCVLTKGDTNAVDKDIMQQELSVGSSSRNPVSPIPGLDSSCCKDADQPSPVSVLEPSFTDDLSSCSECFESLSVDLQGLRMQLQLLKLESEEYVEGSMLISSDEDCGEASTGILEDNGLCRNEDNWESSYMIDVLSESGIDRAQPEAFLEVWHSPECPVSLSVFDELEKRYSDWTTCTRSQRRLLFDRINSGIVNVREQFMSAQPWVRPTGTNLCSKLTKNVLQDCLYRMLGSQGKVKDTALGKVLVSQLQWLNLRDDIDFIGKEVESLLFDDLVAEIAGT. 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04907 398 Pfam Domain of unknown function (DUF4378) 245 394 IPR025486 -
Seca1g04907 398 PANTHER AFADIN 3 396 - -
Seca1g04907 398 MobiDBLite consensus disorder prediction 26 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04907 Seca-Chr1 151731601 151734247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04907 30 395 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 36.364 2.56e-56 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04907 - - pvu:PHAVU_001G171300g 470.314