Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04903 ATGCTTTTGTCATATATGCTCTTCTCCTCTAAAACTGTTTACTTTGTTATGTTTGCAGACAGAATTCTCAGTAAAATGGGTGAAGGAACTTTTGGCCAAGTCTTGGAATGTTTTGATAATGAAAAGAAAGAAGCTGTAGCAATTAAAGTTGTTCGCTCAATAAATAAGTATCGTGAGGCTGCAATGACTGAAATCGATGTCTTGCTGAGGCTAGCCAGATATGATGTTGAAGGTGCACGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCCATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAATCTGTAGCATTTATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAATATTCTTCTTGTCTCATCAGAATTTATTAAAGTGCCAGACTACAAGGTATCATCCTCAAAAGATGGCTCCTATTTTAAGAATCTACCCAAGTCAAGTGCCATTAAGCTCATTGATTTTGGGAGTACAACATTTGAACATCAGGATCATAGTTATGTGGTGTCAACAAGACACTATCGTGCTCCGGAAGTAATCTTAGGTCTTGGGTGGAACTATCCTTGTGATCTCTGGAGTGTGGGCTGCATATTGGTCGAGCTCTGCTCTGGTGAGGCACTTTTCCAAACACACGAGAACTTGGAACATCTTGCCATGATGGAGAGAGTGTTAGGGCCACTACCTTCCCATATGGCGGTCAGGGCTGATCGGCGAGCTGAGAAGTATTTTAAAAGAGGTGCACGGTTAAGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGGGCAGTATGGAAATTGCCACGTTTGCCGAACCTAATAATGCAGCATGTTGATCATTCTGCTGGTGAGTTGATTGACCTCTTGCAAGGGCTCCTAAGGTATGACCCTGCAGAACGGCTTAAAGCAAGAGAAGCATTAAGACACCCCTTCTTCACAAGAGATTCTAAAAGATATGGTTACCCTTTATAA 1074 0.4115 MLLSYMLFSSKTVYFVMFADRILSKMGEGTFGQVLECFDNEKKEAVAIKVVRSINKYREAAMTEIDVLLRLARYDVEGARCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLVSSEFIKVPDYKVSSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPSHMAVRADRRAEKYFKRGARLSWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGELIDLLQGLLRYDPAERLKAREALRHPFFTRDSKRYGYPL. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04903 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Seca1g04903 357 ProSiteProfiles Protein kinase domain profile. 20 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04903 357 SMART serkin_6 20 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04903 357 CDD PKc_CLK 21 346 - -
Seca1g04903 357 SUPERFAMILY Protein kinase-like (PK-like) 22 350 IPR011009 -
Seca1g04903 357 Pfam Protein kinase domain 23 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g04903 357 Gene3D Phosphorylase Kinase; domain 1 21 100 - -
Seca1g04903 357 FunFam Serine/threonine-protein kinase AFC2 96 346 - -
Seca1g04903 357 Gene3D Transferase(Phosphotransferase) domain 1 74 346 - -
Seca1g04903 357 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 21 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04903 Seca-Chr1 151665867 151671453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04903 23 346 Core Cell Cycle Gene Families AT1G76540 27.003 2.56e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Seca1g04903 Pkinase 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04903 K08287 - gmx:100808061 645.195