Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04899 ATGCTTCTCTCATGTCCACAACAGAGAACCTTTGAACCTGTTGAATTTGAGTGCAAAACCTGTAACCGCAAGTTCCCTTCTTTTCAAGCCCTTGGTGGCCACAGGGCTAGCCACAAGAGGGTGAAACTAGATGGTGAAGAATTACTCAAACAACAGGTCAAATCTGATCTGAGTTTGTGGAATAAACCCAAAATGCATGAGTGTTCTATTTGTGGCATGGAATTCTCTTTAGGCCAAGCACTTGGAGGTCACATGAGAAAGCACAGAGCTTTAATCAACCAAGGGATTTCTTCCATCAACCAAGTCATTGCAAAAATCCCAATTCTCAAGAGATCCAATAACTTGGACTTGAACTTGACACCTCTAGAGAATGACTTGATATTAATTGTGTTAATTCTTTTTAAATACTTAGCCATGAAGAGACAGAGAGATATGGGAGAACGGTTAGAGATAGAAAGCATAGATTTGGCCAATTGTCTAATGCTGCTCTCTCATCCTCCCCAAGAAAGCAAGAAAAAACCACACAGAAAAAGTTTTGGGCCTGTGGAATTTGAGTGCAAAACTTGCAACCGCAAATTCCCTTCTTTTCAAGCACTAGGTGGCCACAGGGCAAGCCACAAAAGATCAAAACTTGATGGGGATGAAGATCTCAAAGCACATGCTACATCTCTAAGTTTAGGAAATAAACCCAAAACACATGAGTGCTCCATTTGTGGACAAGAATTTTCTCTTGGACAGGCACTTGGAGGCCACATGAGAAGACACAGAGCTGCCATCAGTGAAGAGTTTTCTTCAATAAAACCTGTTGCTGTTAAAGTTCCAGTTTTTAATGGATCGAATAACAGATCAACAGGGGTTATGTGCTTGGACTTGAATTTAACCCCTCTGCAGAATGACTTGAAGTTATTGTTTGGAAATATGGCACCAAATGTTGATGTCTTGGTCTGA 948 0.4093 MLLSCPQQRTFEPVEFECKTCNRKFPSFQALGGHRASHKRVKLDGEELLKQQVKSDLSLWNKPKMHECSICGMEFSLGQALGGHMRKHRALINQGISSINQVIAKIPILKRSNNLDLNLTPLENDLILIVLILFKYLAMKRQRDMGERLEIESIDLANCLMLLSHPPQESKKKPHRKSFGPVEFECKTCNRKFPSFQALGGHRASHKRSKLDGDEDLKAHATSLSLGNKPKTHECSICGQEFSLGQALGGHMRRHRAAISEEFSSIKPVAVKVPVFNGSNNRSTGVMCLDLNLTPLQNDLKLLFGNMAPNVDVLV. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04899 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Seca1g04899 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Seca1g04899 315 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
Seca1g04899 315 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Seca1g04899 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Seca1g04899 315 Pfam C2H2-type zinc finger 66 90 - -
Seca1g04899 315 Pfam C2H2-type zinc finger 16 40 - -
Seca1g04899 315 Pfam C2H2-type zinc finger 184 208 - -
Seca1g04899 315 Pfam C2H2-type zinc finger 233 257 - -
Seca1g04899 315 SUPERFAMILY beta-beta-alpha zinc fingers 64 255 IPR036236 -
Seca1g04899 315 PANTHER ZINC FINGER PROTEIN ZAT5 150 298 - -
Seca1g04899 315 Gene3D Classic Zinc Finger 181 255 - -
Seca1g04899 315 Gene3D Classic Zinc Finger 14 88 - -
Seca1g04899 315 ProSitePatterns Zinc finger C2H2 type domain signature. 235 255 IPR013087 -
Seca1g04899 315 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Seca1g04899 315 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 255 IPR013087 -
Seca1g04899 315 SMART c2h2final6 66 88 IPR013087 -
Seca1g04899 315 SMART c2h2final6 16 38 IPR013087 -
Seca1g04899 315 SMART c2h2final6 184 206 IPR013087 -
Seca1g04899 315 SMART c2h2final6 233 255 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04899 Seca-Chr1 151643624 151648815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04899 139 313 C2H2 Transcription Factor Family AT2G37430 46.111 5.63e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g04899 zf-C2H2_6 1.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04899 - - aprc:113870747 389.808