Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04897 ATGAAGTACACAACAGCAACCTTTGTTGTTGCCATGACCAATATCCTTCCCGCCATTACCTTTATCATGGCTTGCATTCTTAAACTCGAGAAGATAAAAATAAAAAGTATACACAGTCAAGCAAAGGTGGTAGGGACTTTAGTCGCTTTTGGAGGTGTTATGGTTATGGCACTAATAAAAGGCACATTGTTATTTGAGCTTTACGGGACACACAGAAACAAAAACAACAACCAACATGATAATGAGCCAAATTTTCAACATGTAATAAAAGGATCAGTGATGATCACAATTGGTTGCATTAGTTGGGCTTGGTTCACGATTCTCCAAAAACGGACCCTTAACGTCTACCCTGCTGAGCTCTCTCTTACGGCATGGATATGCCTATTAGGAACAATAGAAGCCGGCATAGTGGCTCTAGTAATGGAAAGGGGCAACCTTTCGGTTTGGTCTTTGAATTGGGATACAAACCTATTGGTCACTATCTATAGTGGCATAGTTTGTTCAGGATTGACTTATTACATCGAAGGAGTAGTGATGAAATATAGAGGCCCGGTTTTTGTAACAGCTTTTAACCCCCTGAGCTTGGTCATTGTGGCTATCATGGGCTCCATCTTTTTGGATGAGCAAATGTATCTTGGAAGGGTGATCGGTGCCATTATTATTGTTATAGGTTTGTATTTAGTGGTGTGGGGTAAAAGCAAAGATTATCACTCACAAAGTCCAATTATGAAAGAGCATATTATATTGCCATCTGAGCAAGCTACAGACGAGAAATGTACCTCTAGCACGGGAAATGTAACTCAAGGAGAAGTATAA 816 0.4007 MKYTTATFVVAMTNILPAITFIMACILKLEKIKIKSIHSQAKVVGTLVAFGGVMVMALIKGTLLFELYGTHRNKNNNQHDNEPNFQHVIKGSVMITIGCISWAWFTILQKRTLNVYPAELSLTAWICLLGTIEAGIVALVMERGNLSVWSLNWDTNLLVTIYSGIVCSGLTYYIEGVVMKYRGPVFVTAFNPLSLVIVAIMGSIFLDEQMYLGRVIGAIIIVIGLYLVVWGKSKDYHSQSPIMKEHIILPSEQATDEKCTSSTGNVTQGEV. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04897 271 Pfam EamA-like transporter family 90 229 IPR000620 GO:0016020
Seca1g04897 271 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Seca1g04897 271 SUPERFAMILY Multidrug resistance efflux transporter EmrE 149 234 - -
Seca1g04897 271 PANTHER WAT1-RELATED PROTEIN 1 236 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04897 Seca-Chr1 151564658 151568371 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04897 1 242 Nodulin-like Gene Family AT2G37460 59.504 5.02e-98 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04897 - - gmx:100777050 341.273