Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04894 ATGGAAAGGCATAACCAAAAAAGATTTGACAGAGTGAAGCCATTCATAGGTGTCATCTTTATACAATTTGGATATGCAGGTATGGATATTCTATCCAAGGCTGCATTGAACAAGGGTATGAGCAATTATGTATTTGTTGTTTATCGCCATGCTGTTGCCTTCATTATCATGGCCCCTTTTGCAATCATTTTCGAAAAGAAATTAAGGCCAACGATGAAAATTTCAATCTTTAGGAAGATAGTGATGCTCAGTTTGCTAGAGCCAGTTATTGACCAGAACTTATATTTTTTGGGAATGAAATACACAACAGCAACATTTGTTGTTGCCATGACCAACATCCTTCCTGCCATTACCTTTCTTTTGGCTTGCATTCTTAAACGTGAGAGGATAAAAATAAAAAGTATACACAGTCAAGCAAAAGTGGTTGGGACTTTAGCCACTGTTGCAGGTGCCATGGTCATGACACTAATAAAAGGCCCAATATTTGAGCTTTTTGGGACACATGGAAGCAAAAAGAACAACCAACTAAGTGGTGGGGTAGATCTTCAACATGCAATAAAGGGATCAGTGATGATCACAATTGGTTGCATTAGTTGGGCTTGTTTCATAATTCTCCAAGCTATTACGCTTGAAGCCTATCCAGCTGAGCTCTCTCTTACAACATGGATATGCCTATTAGGAACAATTGAAGGTAGCATAGTAGCCCTAGTTATGGAAAGGGGCAACCCTTCAGTTTGGTCATTAAATTGGGATGCAAAACTGCTAGCAATTGTTTACAGTGGCTTAATTTGCACAGGAATGGTTTATTACATCCAAGGAGCAGTGATGAAATATAGAGGTCCAGTCTTTGTAACAGCTTTTAATCCCCTGTGCATGGTCATTGTGGCAATCATGGGCTCCTTCTTTCTGGATGAACAAATGTACCTTGGAAGGGTCATCGGTGCCATTGTTATTATTTTAGGGCTATATCTAGTTGTCTGGGGTAAAAGCAAAGATTACAATTCACCAAGTCCAACTATGAAGGAGCATATATTGCCAGCTAAGCAAACTCCAGATGAGAGCAATACTCAAGAACATTATAATCCTGATCAGGTCATCACTATCAGTAACTTTGGTGTGGGAGAAATGTAG 1131 0.3935 MERHNQKRFDRVKPFIGVIFIQFGYAGMDILSKAALNKGMSNYVFVVYRHAVAFIIMAPFAIIFEKKLRPTMKISIFRKIVMLSLLEPVIDQNLYFLGMKYTTATFVVAMTNILPAITFLLACILKRERIKIKSIHSQAKVVGTLATVAGAMVMTLIKGPIFELFGTHGSKKNNQLSGGVDLQHAIKGSVMITIGCISWACFIILQAITLEAYPAELSLTTWICLLGTIEGSIVALVMERGNPSVWSLNWDAKLLAIVYSGLICTGMVYYIQGAVMKYRGPVFVTAFNPLCMVIVAIMGSFFLDEQMYLGRVIGAIVIILGLYLVVWGKSKDYNSPSPTMKEHILPAKQTPDESNTQEHYNPDQVITISNFGVGEM. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04894 376 Pfam EamA-like transporter family 18 154 IPR000620 GO:0016020
Seca1g04894 376 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020
Seca1g04894 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Seca1g04894 376 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 331 - -
Seca1g04894 376 PANTHER WAT1-RELATED PROTEIN 14 333 IPR030184 GO:0016020|GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04894 Seca-Chr1 151519775 151523083 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04894 2 372 Nodulin-like Gene Family AT2G37460 60.916 8.43e-165 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04894 - - gmx:100777050 565.074