Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04893 ATGGATAGCTATAACCAAAAAAGGTTTGATAGGGTAAAGCCATTCATAGGTGTAGTGTTCTTACAATTTGGATATGCTGGCATGGATGTTCTGTCCAAGGCTGCAATGAACAAGGGAATGAGCAATTATGTTCTAGTTGTCTATCGCCATGCTGTGGCCTTCATTGTCATGGCTCCTTTTGCATTATTCTTAGAAAAGAAAGTAAGGCCAAAGATGACATTTTCAATCTTCATGAAGATATTGGCTCTCAGTGTGCTAGAGCCAGTTCTTGACCAGAATTTATATTTTTTGGGAATGAAGTACACAACAGCAACTTTTGCAGTTACCATGCTCAATGTCCTTCCTGCCATTACCTTTGTCATGGCTTGCATTCTTAAGCTTGAGAAGATAAAAATAAAAAGTATCCGCAGTCAAGCAAAGGTGGTTGGGACTTTAGCCACTGTTGCAGGAGCCATGGTCATGACATTGATAAAAGGCCCAGTACTTGATCTTTTTGGGACACATAGAAGCAATATCCATAACCAATATAATGGTGGAGCTAATGTTCAACATGCAATAAAAGGATCAGTGATGATCACAATTGGTTGCTTTAGTTGTGCTTGTTTTACAATTCTTCAAGTGAGTTTCTATTTATCATTAGCCATTACCCTTGAAACCTACCCTGCTGAACTCTCTCTTACAGCATGGATATGCCTATTTGGAACAATTGAAGGTGGCATAGTGGCCTTGATTATGGAAAGGGGTAACCCTTCAGTTTGGTCTATAAATTGGGATACAAAACTATTGGCTGCTGTCTATAGTGGCATAATATGCTCAGGAATGGCTTATTACATCCAAGGAGCAGTGATGAAATATAGAGGTCCAGTCTTTGTAACAACCTTCAATCCCTTATGCATGATCATTGTGGCTATCATGGGTTCCTTCTTTTTGGCTGAGCAAACCTACCTTGGAAGGGTGATTGGTGCCATTATCATTATTATAGGGCTATATCTAGTGGTGTGGGGTAAAGGCAAAGATTATGACACACCAAATCCAATTATTAAAGAGCAGATATTGCCAGAAAAGCAACCTACAGAGAGCAACGCCAAAGAGGAGCATTCTAATCACAAGGTCATCGTTATCAATAACTTTGATGCGGGAAACATAACTCAAGATGAACAAGTACGAGGAAACACACAAAATTCAATCTAA 1191 0.3938 MDSYNQKRFDRVKPFIGVVFLQFGYAGMDVLSKAAMNKGMSNYVLVVYRHAVAFIVMAPFALFLEKKVRPKMTFSIFMKILALSVLEPVLDQNLYFLGMKYTTATFAVTMLNVLPAITFVMACILKLEKIKIKSIRSQAKVVGTLATVAGAMVMTLIKGPVLDLFGTHRSNIHNQYNGGANVQHAIKGSVMITIGCFSCACFTILQVSFYLSLAITLETYPAELSLTAWICLFGTIEGGIVALIMERGNPSVWSINWDTKLLAAVYSGIICSGMAYYIQGAVMKYRGPVFVTTFNPLCMIIVAIMGSFFLAEQTYLGRVIGAIIIIIGLYLVVWGKGKDYDTPNPIIKEQILPEKQPTESNAKEEHSNHKVIVINNFDAGNITQDEQVRGNTQNSI. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04893 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 338 - -
Seca1g04893 396 Pfam EamA-like transporter family 195 333 IPR000620 GO:0016020
Seca1g04893 396 Pfam EamA-like transporter family 21 154 IPR000620 GO:0016020
Seca1g04893 396 PANTHER WAT1-RELATED PROTEIN 13 340 IPR030184 GO:0016020|GO:0022857
Seca1g04893 396 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04893 Seca-Chr1 151489856 151492567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04893 6 389 Nodulin-like Gene Family AT2G37460 62.176 9.21e-171 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04893 - - gmx:100777050 596.66