Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04892 ATGTTGCAACAGTCTAATTCAGTGTTATTTGAGTCATTGAGGAGGCTTCAACTGATGGAACTCACTATGGATCTCCTGAAGCTGTGTAAGTCCTCTAATTTAACTCTCCAGGCAACCGAGATTGGAAAAGCTGTTAATCCTCTTCGAAAGCATGGATCAAAGGATATTTCTCAACTTGCACGGACTCTTATCAAGTATGAATTGTTTTTTCTCGGATACTTGTTTATGGGCAACAAACTACACATTCTAAACATAGTTATTGAATTATATATAGTGTCTGAAAAGGAATGGTGGATGAGTGGGTCAAGGCTACCACACCTATTGCAGGTGTTTGTTGTGAAAAATTCAATTTAG 354 0.3785 MLQQSNSVLFESLRRLQLMELTMDLLKLCKSSNLTLQATEIGKAVNPLRKHGSKDISQLARTLIKYELFFLGYLFMGNKLHILNIVIELYIVSEKEWWMSGSRLPHLLQVFVVKNSI. 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04892 117 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 10 65 IPR035441 -
Seca1g04892 117 ProSiteProfiles TFIIS N-terminal domain profile. 1 72 IPR017923 -
Seca1g04892 117 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 4 65 IPR044805 -
Seca1g04892 117 Pfam TFIIS helical bundle-like domain 30 65 IPR017923 -
Seca1g04892 117 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 2 66 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04892 Seca-Chr1 151465652 151466078 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca1g04892 Med26 7.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04892 - - gmx:100775579 82.4185