Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04884 ATGGCTTTTTTCTCTGGAGTTCAACGCTTCATTCGCCACTCCCCACTTCTTCACTCTATTCGTTTCAGTTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTTTCAAGACTGACAACAGATCAAAAACTTACAGAAGCATTTGCTCCTTTTGGGCAGCTGATGGAAGCTAAGGTGATAACCGATAGAGTGTCTGGAAGATCGAAGGGTTTTGGTTTTGTAACTTATGCAACCATAGAAGAAGCTGAAAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCAAGACCTCCTCAGCAATCACAGTCTCAGCCCTCTGAATCAGGTTTCACAGTTAACAAAACAATTGGCTGGTGTGGTTGA 408 0.4314 MAFFSGVQRFIRHSPLLHSIRFSSTLTSPKLFVSGLSRLTTDQKLTEAFAPFGQLMEAKVITDRVSGRSKGFGFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSESGFTVNKTIGWCG. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04884 135 Gene3D - 22 129 IPR012677 -
Seca1g04884 135 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 97 IPR000504 GO:0003723
Seca1g04884 135 PANTHER NUCLEOLAR PROTEIN 8 19 134 - -
Seca1g04884 135 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Seca1g04884 135 FunFam RNA binding protein 17 129 - -
Seca1g04884 135 SMART rrm1_1 30 103 IPR000504 GO:0003723
Seca1g04884 135 MobiDBLite consensus disorder prediction 105 127 - -
Seca1g04884 135 SUPERFAMILY RNA-binding domain, RBD 28 127 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04884 Seca-Chr1 151402944 151405995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04884 31 122 Eukaryotic Initiation Factors Gene Family AT3G16380 37.895 7.67e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04884 - - gmx:100306326 214.157