LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g04882	ATGACTTCATTCTTGAAGCCAGAGAATGCCCTAAAGAGGGTGGAAGAATTAATCAATGTTGGTCAGAAGCAGGATGCCTTGCAGACTCTTCATGACCTTATTACTTCGAAAAGATACCGAGCATGGCAGAAGACACTTGAAAGGATTATGTTCAAGTATGTAGAACTGTGTGTAGACATGCGTAAAGGACGGTTTGCAAAGGATGGTCTCATTCAGTATCGTATCATATGTCAGCAAGTGAATGTTAGTTCGCTGGAGGAGGTGATCAAGCATTTCATGCACCTGTCGACTGAGAAAGCTGAACAAGCTCGTAGCCAGGCACAGGCATTAGAAGAAGCCTTGGATGTTGATGACTTAGAGGCTGATAAAAGGCCAGAGGACTTGATGCTAAGCTATGTCAGTGGTGAGAAAGGAAAGGACAGGTCCGACAGGGAGCTTGTTACCCCATGGTTTAAATTCCTATGGGAAACTTACAGGACAGTCCTTGAAATATTGCGGAACAACTCAAAATTGGAATCCTTATATGCTATGACAGCCCATCGAGCCTTCCAGTTCTGTAAGCAATATAAACGAACAACAGAATTTCGAAGACTTTGCGAGATCATAAGAAACCATTTAGCCAATCTTAATAAATATCGGGACCAACGAGACCGGCCTGATCTTTCTGCTCCTGAGAGCTTGCAACTATATCTTGATACAAGATTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTCCGATCAGTTGAAGATATACATGGACTGATGTGCATGGTCAAGAAAGTCCCTAAGCCATCCTTGATGGTTGTTTACTATGTTAAGCTGACAGAAATATTTTGGATATCATCAAGTCATCTATATCATGCATATGCATGGTTCAGGCTCTTTTTATTACAAAAAAGCTTCAATAAAAATCTGAGTCAGAAGGATTTGCAATTAATAGCATCATCTGTTGTTCTGGCTGCACTTTCAGTGCCACCTCATGATCACACTCATGGTGCATCTCATTTGGAATTGGAGCATGAAAAGGAGAGAAACTTGAGGATGGCCAATCTTATTGGCTTTAATCTTGAAACAAAACCTGAGAGCAGAGAAGTGCTCTCGAGGTCATCACTTCTTGCTGAACTGGCATCGAAGGGTGTGATGTCTTGTGTAACTCAGGAAGTGAAGGACATATACTATCTTCTGGAACATGAATTTCTTCCCTCAGATCTTGCACTAAAAGTGCTGCCCTTGTTAACTAAAATTTCAAAATTAGGGGGCAAGCTTTCCACCGCTTCATCTGTTCCAGAGGTTCATTTGTCTCAGTATGTACCAGCACTGGAAAAGCTAGCTACCTTGAGGTTGCTACAGCAGGTGTCTAATGTGTACAAGACAATGAAGATTGAAACCTTATCTGGGATGATCCCCTTCTTCGATTTTTCTGTAGTGGAAAAGATTTCTGTGGATGCTGTTAAGCAGAAGTTTGTATCGATGAAAGTTGATCACATGAAAAATGTTGTCATTTTCTGTAAAATGAATCTTGAGTCTGATGGCTTAAGGGATCACTTGGCAAATTTTGCTGAACAATTGAATAAGGCAAGACAAATGATTTATCCTCCTGATACGAAACCATCTAAACTTGGGGCTATGCTTCCAACTTTGACAGAGGTTGTCGCCAAAGAACACAAGAGGCTCCTTGCTCGAAAATCGATTATCGAGAAGAGGAAAGAAGAACAAGAACGCCAGCTTCTTGAAATGGAACGTGAGGAGGAATCAAAGAGGTTAAAACTACAAAAGATAACTGAAGAAGCAGAGCAAAGAAGGCTTGCAACTGAGTATGAGAGGATGAAGAATCAGAGAATCCTCAGGGAAATAGAGGAAAGAGAAAATGAAGAAGCTCAAGCTTTACTTCAGGAAGCTGAGAAGCGAATCACTAAGGCGAAAGGTAAAAGGAGGCCAATCATAGAGGGGGACAAAATGACCAAGCAGGCATTGATGGAGTTGACATTGACTGAACAACTCCGGGAAAGACAGGAGATGGAAAAGAAACTGCAAAAATTAGCTAAAACCATGGATTATCTGGAAAGAGCAAAAAGAGAGGAGGCTGCTCCCCTGATTGAAGCTGCATATCAACAGCGCCTAGTGGAAGAGAGGATTCTTCATGAGCGTGAGCAACAACAAGAGGTTGAACTGAGCAAACAGAGGCACGAGGGAGACCTTAAGGAGAAGGAGAGGCTTGTTCGAATGATGAGCAATAAAGAGATATATCAAGCGAGAGTTGTCAGTCATCGCCAAGCAGAATTTAACAGATTGAAGAGAGAAAGGGAGGAGCGAATCTCTAGGATTTTACAGTCCAGGAGGCAGGAAAGAGAAAAAATGAGGAAGTTGAAGTTTTATCTTAAGTTAGAAGAAGAGAGACAACAAAAATTGCATGAGGAAGAAGAAGCTCGGAAGCGTGAAGAGGCTGAGAGGAAGAAGAAGGAAGAGGCTGAACGCTTAGCAAAATTGGCTGAGATAGCTGAAAAGCAGAGGCAAAGAGAGCGGGAACTTGAAGAAAAGGAGAAACAAAGGAGAGAAGCATTGTTGGGTAAATCTGCTGAACCCGCTTTTAAGCCTTCTGAGCCTCCTGCACGTCCATTGGATTCTGCACCCGCTGCGGCTGCGGCTGCCGCAGCCCCAGCTCCAGCCCCAGGTAAATACGTCCCTAAGTTCAGGAGAGAAAGAACTGAAAGCACAGCAGCTGCTCCTCCTCCAGAAACAGATCGTTGGAATAACAGCAGCAGCAGGCCAGATGGTGGTGACAGGTGGCGTAGTGATGATCGCAGAACTGCATTTGGTTCTGGTTCTAGGTCATCTTCTACTTGGTCATCTTCCAGGAATCGTGATCGTTGA	2889	0.4327	MTSFLKPENALKRVEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLESLYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKVPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDHTHGASHLELEHEKERNLRMANLIGFNLETKPESREVLSRSSLLAELASKGVMSCVTQEVKDIYYLLEHEFLPSDLALKVLPLLTKISKLGGKLSTASSVPEVHLSQYVPALEKLATLRLLQQVSNVYKTMKIETLSGMIPFFDFSVVEKISVDAVKQKFVSMKVDHMKNVVIFCKMNLESDGLRDHLANFAEQLNKARQMIYPPDTKPSKLGAMLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLKLQKITEEAEQRRLATEYERMKNQRILREIEERENEEAQALLQEAEKRITKAKGKRRPIIEGDKMTKQALMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERILHEREQQQEVELSKQRHEGDLKEKERLVRMMSNKEIYQARVVSHRQAEFNRLKREREERISRILQSRRQEREKMRKLKFYLKLEEERQQKLHEEEEARKREEAERKKKEEAERLAKLAEIAEKQRQRERELEEKEKQRREALLGKSAEPAFKPSEPPARPLDSAPAAAAAAAAPAPAPGKYVPKFRRERTESTAAAPPPETDRWNNSSSRPDGGDRWRSDDRRTAFGSGSRSSSTWSSSRNRDR.	963

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g04882	962	Coils	Coil	615	649	-	-
	Seca1g04882	962	SMART	motif in proteasome subunits, Int-6, Nip-1 and TRIP-15	441	532	IPR000717	-
	Seca1g04882	962	Gene3D	UVR domain	217	267	-	-
	Seca1g04882	962	Coils	Coil	669	699	-	-
	Seca1g04882	962	Coils	Coil	732	752	-	-
	Seca1g04882	962	Pfam	PCI domain	373	508	IPR000717	-
	Seca1g04882	962	ProSiteProfiles	PCI domain profile.	316	513	IPR000717	-
	Seca1g04882	962	Hamap	Eukaryotic translation initiation factor 3 subunit A [EIF3A].	1	935	IPR027512	GO:0005852
	Seca1g04882	962	Gene3D	-	352	510	-	-
	Seca1g04882	962	Gene3D	-	268	342	-	-
	Seca1g04882	962	FunFam	Eukaryotic translation initiation factor 3 subunit A	352	494	-	-
	Seca1g04882	962	FunFam	Eukaryotic translation initiation factor 3 subunit A	268	342	-	-
	Seca1g04882	962	Coils	Coil	798	859	-	-
	Seca1g04882	962	MobiDBLite	consensus disorder prediction	806	962	-	-
	Seca1g04882	962	FunFam	Eukaryotic translation initiation factor 3 subunit A	217	268	-	-
	Seca1g04882	962	Coils	Coil	561	602	-	-
	Seca1g04882	962	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT	1	953	IPR027512	GO:0005852
	Seca1g04882	962	Coils	Coil	93	120	-	-
	Seca1g04882	962	MobiDBLite	consensus disorder prediction	806	863	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g04882	Seca-Chr1	151347601	151354958	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g04882	1	960	Eukaryotic Initiation Factors Gene Family	AT4G11420	71.400	0.0	1317

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g04882	K03254		-	gmx:100803796	1500.72