LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g04873	ATGGCGGCGTCACGGCGGCTCCGGGATCTTCAATCGGAAGCGTCGAACAAGATCTGCGTGGACTGTTCCCAGAAGAATCCTCAATGGGCCTCCGTCTCCTACGGTGTCTTTATGTGTCTAGAATGTTCCGGCAAGCACCGAGGCCTCGGCGTTCACATCTCCTTCGTCCGATCCGTAACCATGGACTCCTGGTCCGAACTTCAGATCAAGAAAATGGAAGCCGGAGGCAACCAGAAACTCAATGCCTTCCTCGCTCAATACGGTATCCCTAAGGAAACTGACATCGTCACCAAGTACAACTCCAACGCTGCGTCAATCTACCGTGACCGTATTCAGGCCCTCGCCGAAGGCCGTCCCTGGCGTGATCCTCCTGTTGTTAAGGAGAACGTCCGCTCCTCTGCGGGGAAGCCGCCATTGGCTAACACTGGAGGCGGAGGTTGGGATAATTGGGACGATAACGACGGTTTCGGATCTCGCGGCAGCGATATCCGGCGAAATCAGTCTACCGGCGATGTTAGGGGATTCGGCGGAGGCGGAAACGCGCCGGCGAGGTCGAAGTCGACGGAGGATATCTACACGCGGGCGCAATTGGAGGCTTCCGCTGCCAACAAGGAGAGCTTCTTCGCGCAGAAGATAGCGGAGAATGAATCGCGACCGGAGGGGCTTCCGCCGTCGCAGGGTGGGAAGTACGTTGGATTCGGATCTAGCCCCGCTCCTGCAAACAGGAATATTCCCCAAAACGATTATTTCTCTGTCGTTTCTCAGGGATTTGGTAAATTATCCTTGGCTGCTGCCTCTGCTGCTCAGTCTGCGGCTAATGTTGTTCAGGCAGGAACGAAAGAGTTCTCTGCTAAGGTAAAGGATGGGGGTTATGATCACAAGGTCAATGAAACTGTCACTATTGTCTCTCAGAAGACATCAGAGATTGGGCAAAGGACATGGGGTATCATGAAAGGGGTCATGGCATTGGCTTCACAGAAGGTTGAGGAGTACACTAGAGATAACCCAAATGGGAATTCTGATAACTGGCAACGAAATGAAAATAATAGACATGGTTTTTACCAAGAGTACAATCAAGAGAATAAAGGCTGGAATTCTTCTACCAGAGAAGGACAACCTTCATCAGGTGGACAAACTAATACTTATAACTCAAGTTCTTGGGATGATTGGGACCACAAAGATTCCAGAAAGGAAGAACCAGCTAGAGGATCAGCTCCTCAGTCATCAAATGGGCAGTTTGATAGTTACAACTCAAGCTCTTGGGATGATTGGGACCACAAAGATACAAGAAAGGAAGAACCAGCTAAACGATCAGCTCCCTGTAACGATGATGGTTGGGCTGGCTGGGATGATGGCAAAGATGATGGATTTGATAATAAAGCTTCTGGTCATAACGGAACGTCAGGTTCTGCCTGGACAGGAGGAGGCTTTCTCTAA	1437	0.5066	MAASRRLRDLQSEASNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSELQIKKMEAGGNQKLNAFLAQYGIPKETDIVTKYNSNAASIYRDRIQALAEGRPWRDPPVVKENVRSSAGKPPLANTGGGGWDNWDDNDGFGSRGSDIRRNQSTGDVRGFGGGGNAPARSKSTEDIYTRAQLEASAANKESFFAQKIAENESRPEGLPPSQGGKYVGFGSSPAPANRNIPQNDYFSVVSQGFGKLSLAAASAAQSAANVVQAGTKEFSAKVKDGGYDHKVNETVTIVSQKTSEIGQRTWGIMKGVMALASQKVEEYTRDNPNGNSDNWQRNENNRHGFYQEYNQENKGWNSSTREGQPSSGGQTNTYNSSSWDDWDHKDSRKEEPARGSAPQSSNGQFDSYNSSSWDDWDHKDTRKEEPAKRSAPCNDDGWAGWDDGKDDGFDNKASGHNGTSGSAWTGGGFL.	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g04873	478	MobiDBLite	consensus disorder prediction	387	401	-	-
	Seca1g04873	478	SUPERFAMILY	ArfGap/RecO-like zinc finger	5	116	IPR037278	-
	Seca1g04873	478	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	1	409	IPR044519	GO:0005096\|GO:0016192
	Seca1g04873	478	Gene3D	Arf GTPase activating protein	1	131	IPR038508	-
	Seca1g04873	478	PRINTS	HIV Rev interacting protein signature	16	35	IPR001164	GO:0005096
	Seca1g04873	478	PRINTS	HIV Rev interacting protein signature	35	52	IPR001164	GO:0005096
	Seca1g04873	478	PRINTS	HIV Rev interacting protein signature	56	77	IPR001164	GO:0005096
	Seca1g04873	478	MobiDBLite	consensus disorder prediction	362	478	-	-
	Seca1g04873	478	MobiDBLite	consensus disorder prediction	214	238	-	-
	Seca1g04873	478	MobiDBLite	consensus disorder prediction	420	439	-	-
	Seca1g04873	478	MobiDBLite	consensus disorder prediction	122	188	-	-
	Seca1g04873	478	SMART	arf_gap_3	1	120	IPR001164	GO:0005096
	Seca1g04873	478	MobiDBLite	consensus disorder prediction	362	386	-	-
	Seca1g04873	478	MobiDBLite	consensus disorder prediction	402	419	-	-
	Seca1g04873	478	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	4	120	IPR001164	GO:0005096
	Seca1g04873	478	Pfam	Putative GTPase activating protein for Arf	5	100	IPR001164	GO:0005096
	Seca1g04873	478	CDD	ArfGap_ArfGap1	3	117	-	-
	Seca1g04873	478	FunFam	ADP-ribosylation factor GTPase-activating protein	1	129	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g04873	Seca-Chr1	151284992	151289614	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g04873	5	138	C2H2 Transcription Factor Family	AT4G21160	39.706	1.21e-22	97.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g04873	K12492		-	gmx:100778302	748.814