Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04872 ATGCCCAACGCGACCACCATCAAAACATCCTCCGATGGAGCCTGGCAGGGCGATAATCCTTTGAACCACGCTCTTCCACTCTTGATCATTCAAACCACCCTTGTCCTCTTTGTCAGCCGCACCCTCGCCTTCTTCCTCAAACCCCTTCGTCAACCCAAAGTTGTTGCGGAGATTATTGGTGGAATTTTGCTAGGACCTTCAGGCATTGGGAGGAACAAAAGTTTCATGCAGATAGTGTTCCCTCCATGGAGCACTCCAATACTTGAATCCGTAGCCAGCATTGGTCTCTTATTCTACCTCTTCCTAGTGGGTCTAGAGCTTGACCTTCGCACCATTGGCCGAAGCGGCAAGCGAGCCTTCAACATCGCCGTCGCCGGAATATCCCTTCCATTCCTCTTCGCGGTCGGCGTAACATTCCTCCTTCAAAAAGCCATCCACTCTGAAAACCACCACAAAGTCAGTTACATTCAGCGCTTCGTTTTCTTAGGTGTTTCTCTCTCTATAACCGCTTTCCCTGTGCTCGCCCGCATCTTAGCAGAACTCAAACTCCTAACAACCCGCGTTGGAGAAACCGCCATGGCTGCCGCCGCCTTCAACGACGTCGCCGCATGGGTTTTATTAGCCCTCGCGGTGGCTCTAGCCGGTGGAGGCAGCGGCGGCGGTGGACATGGCAACAAGAGCAGCCTCCTCACATCGGTATTGGTGCTGTTTTCAGGCATTGCGTTTGTTACATTCATGATGTTGGTTGTTAGACCGATGATGAACCGTGTCGCGCGGCGGTGTTCAAGGGAACATGATGTGTTGGATGAAATGTACATATGTTTGACGCTTGCTGGGGTGATGTTGTCGGGGTTTGTAACGGATTTGATAGGTATACATTCGATTTTTGGGGCTTTTGTTTTTGGATTAACGATTCCGAGAGGGGGTGAGTTTGCGAGCAGGGTTACGAGGAGGATTGAGGATTTTGTGTCAACGTTGTTGCTTCCTTTGTACTTTGCGTCGAGTGGGTTGAAGACTGATGTGGGGAAGTTGCAAGGTGTGGTGGAATGGGGGTTGCTTTTGGTGGTTATAGCGACGGCGTGTGTGGGGAAGATTTTGGGGACTTTTGTTGTGGCGGTTATGTGTACGATGCCTGTGAGAGAATCGTTGACGCTTGGAGTGTTGATGAATACCAAAGGGTTGGTGGAGCTTATTGTTCTCAATATTGGCAAAGAAAAGAAGGTTCTTAACGACGAGATGTTTGCCATCCTGGTGCTCATGGCTCTCTTCACCACCTTCATTACTACTCCAGCAGTTGTGGCAATATATAAACCCTCTCGTTCTGTTAATCCCCGCAACCATCATGGCCAATTGCCAAAAACGACACCACTAACAGACATGCAAGAGAAGCTTCGCATTCTTGCTTGCATCCATGGAACTGGAAACATCCCCTCACTAATCAACTTCATTGAATCAGTTCGGGCCACCAACAAGTCTAAGCTCAAACTCTACGTGATGCAACTCACTGAACTCACTGATAGCTCATCCTCTATCTTGATGGTTCAACGCAGCAGAAAGAGTGGGTTTCCCTTCATAAACAGATTCCAGAAAGGAACAATGCATGAGCAAATTGCCACAGCATTTCAGGCTTATGGTCAAGTGGGTCAAGTTACTGTGCATCATTTGACATCCATCTCATCATTATCAACAATCCATGAGGACATATGCCATGTTGCAGAAGAGAAAGGTGTGGCAATGATCATACTGCCCTTCCACAAAAGGTGGAGAGGGGATGATGAAGAGGGAATAGAGAACATAGGGCAGGGATGGAGGGAAGTCAATCAGAGGGTGCTTCAGAGTGCACCCTGCTCTGTTGCAGTGCTTGTCAATCGTGGGGTTGGCCCCAATGCTGTTGCTGCTGCAGGGAAAAGGGTCTGCATAATTTTCATTGGTGGACCAGATGATCGAAAGGTTTTAGAATTGGGAAGTAGAATGGCAGAACATCCAGCAATTAGGTTGTCTGTTGTGAGATTCACTTCATACAGAGAAGCCAGGGACGAGGGATGCAACTACAACTCATCAACATCAGCTGACAATTGGGAAAAGGAGAAGGAGTTGGATGAGGTGGCTGTAAACGAGTTCAAAACTAAATGGCTTGGGTCAGTAGAGTACATTGAAAAGGACACAGCCAACATAGCAGAGGAGGTGCTAGCAATTGGTAAGGCTAAGAAGTACGAGCTAGTTATTGTGGGGAAGGGACATCAACTTCTTGAGTCAAATATGATGACAAACATAAAAGATTCTTATCCTGAACATGCTGAGCTAGGGCCTATTGGGGATCTGTTGACTTCTTCAGGTCAGGGCATTATGAGTTCAGTGCTCGTTATACAGGACCAACATTTGATAAATTCAAATGAAACTCTCAGAAGAACAGCAATGGCCAAGAGTACTGTGATTAGTACTATCTCAGAAATTGAATCATCAGTGTAA 2469 0.4735 MPNATTIKTSSDGAWQGDNPLNHALPLLIIQTTLVLFVSRTLAFFLKPLRQPKVVAEIIGGILLGPSGIGRNKSFMQIVFPPWSTPILESVASIGLLFYLFLVGLELDLRTIGRSGKRAFNIAVAGISLPFLFAVGVTFLLQKAIHSENHHKVSYIQRFVFLGVSLSITAFPVLARILAELKLLTTRVGETAMAAAAFNDVAAWVLLALAVALAGGGSGGGGHGNKSSLLTSVLVLFSGIAFVTFMMLVVRPMMNRVARRCSREHDVLDEMYICLTLAGVMLSGFVTDLIGIHSIFGAFVFGLTIPRGGEFASRVTRRIEDFVSTLLLPLYFASSGLKTDVGKLQGVVEWGLLLVVIATACVGKILGTFVVAVMCTMPVRESLTLGVLMNTKGLVELIVLNIGKEKKVLNDEMFAILVLMALFTTFITTPAVVAIYKPSRSVNPRNHHGQLPKTTPLTDMQEKLRILACIHGTGNIPSLINFIESVRATNKSKLKLYVMQLTELTDSSSSILMVQRSRKSGFPFINRFQKGTMHEQIATAFQAYGQVGQVTVHHLTSISSLSTIHEDICHVAEEKGVAMIILPFHKRWRGDDEEGIENIGQGWREVNQRVLQSAPCSVAVLVNRGVGPNAVAAAGKRVCIIFIGGPDDRKVLELGSRMAEHPAIRLSVVRFTSYREARDEGCNYNSSTSADNWEKEKELDEVAVNEFKTKWLGSVEYIEKDTANIAEEVLAIGKAKKYELVIVGKGHQLLESNMMTNIKDSYPEHAELGPIGDLLTSSGQGIMSSVLVIQDQHLINSNETLRRTAMAKSTVISTISEIESSV. 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04872 822 PANTHER CATION/H + ANTIPORTER 8 792 - -
Seca1g04872 822 Gene3D - 496 767 - -
Seca1g04872 822 FunFam Cation/H(+) antiporter 15 27 443 - -
Seca1g04872 822 Gene3D - 27 442 IPR038770 -
Seca1g04872 822 Pfam Sodium/hydrogen exchanger family 34 432 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04872 Seca-Chr1 151276594 151283027 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04872 74 793 Antiporter Super Family AT3G53720 59.176 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04872 K26731 - gmx:100799165 1152.5