Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g04870 ATGGCGCCATTGAACATAACCAATATCAAAACCTCCTCCAATGGAGTTTGGCAAGGTGACAATCCCTTAAACTACGCCTTCCCACTCCTCATCGTTCAAACCACCTTAGTTCTCGTCGTCAGCCGCGCCCTCGCTTTCCTCTTCAAACCTCTCCGACAACCCAAAGTCATTGCCGAGATCGTCGGTGGAATTTTACTTGGACCATCGGCATTAGGAAGGAACAAGAGCTACCTACATCGCATCTTCCCATCATGGAGCACTCCCACACTGGAATCAGTTGCAAGCATAGGCCTTCTTTTCTTCCTGTTTCTCGTAGGTCTAGAATTGGATCTCAATTCCATTCGCCGGAGCGGAAGAAAAGCATTCACCATAGCCGCCGTCGGGATCTCCGTCCCTTTCATCGGCGGCATCGGCGTGGCGTTCGTCCTCCGCAAGACGATCGAGGGAGCCGATAAAGTCGGTTTCGGTCAATTCATCGTCTTCATGGGAGTGGCACTTTCTATAACCGCATTCCCTGTGCTCGCACGTATCCTAGCAGAACTCAAGCTTCTAACCACACGTGTGGGAGAAACCGCTATGGCTGCTGCCGCATTCAACGACGTCGCTGCATGGATCCTCCTCGCACTCGCCATAGCACTCGCAGGGAACGGAAACGGAGAGAGCAAGAGCCCTCTCGTGTCAATCTGGGTTCTACTCTCCGGTGCAGCTTTCGTGGTCTTCATGATGGTTGTTATTGGACCGTTGATGACACGTGTCGCGAGGAGATGCTCTTGGGAGAATGAGGCCGTTGATGAGGTTTATATTTGTTTGACTTTAGCGGGGGTGATGGTGTCCGGGTTCATAACGGACTTAATTGGGATCCACTCAATTTTCGGGGCGTTTGTGTTCGGGTTGACGATTCCAAAGAGTGGGAATTTTGCTGAGAGGTTGATAGAGAGGATTGAGGATTTCGTTTTGGGTTTGCTTCTTCCTCTTTACTTTGCTTCTAGTGGGTTGAAAACTGATGTCACTAAAATCCGTGGAGGTAAAGCATGGGGGCTTCTTGCTCTCGTGATATCCACCGCTTGTGCTGGGAAAATTCTAGGGACCTTCATAGTTGCCATCATGTGCAGGATTCCCGCCATGGAATCGCTCACACTTGGCGTCCTCATGAACACCAAAGGTCTCGTCGAGCTCATCGTACTCAACATTGGAAAAGAGAAAAAGGTTTTGAATGATGAAATATTTGCAATCTTGGTACTCATGGCTCTATTCACCACCTTCATCACAACCCCATTAGTGATGGCCATTTATAAACCAGCACGTGGCATCACAGATAAGACTTGTCGCAAATTAGGTGACCTCTCTTCCCACTCTAATAAGAAGGACATGGATGAGCTTCGAGTCCTAGCTTGCATCCACGGTCCAAGTAACATCCCTCCCATCATAAGCCTCATTGAATCAACACGTGGCACCAAAAAGTCCCTCATCAAGGTCTTCATCATGCACCTCGTTGAGCTCACTGAACGTTCTTCTTCCATCATCATGGTTCAGCGTGCTCGCAAAAACGGTTTCCCATTCTTCAACCGTTTCAACCGTGACGAATGGTATAACCGTCTCGCTGGGGCCTTCCAGGCCTACAGTCAATTGGGCCGGGTCTCGGTCCGGTCCACTACCGCTATCTCTTCTCTCTCCACCATGCATGAGGATATTTGCCACGTGGCGGAGGAAAAGCGCGTGACTATGATCCTATTGCCCTTCCACAAACAATGGAGGATGGAAGTTGATAATGACGACAATGAGGCCCATGTCCATGAGGTGTTGGAGAATGCGGGCCATGAATGGAGAGGGGTGAACCAAAGGGTGCTTAAGAATGCGCCTTGCTCTGTGGCTGTGCTTGTGGACCGAGGACATGGCATTGGGTCTAAGACTCCAGGCCCAAATACGACCGAGGCCCAGAGAATATGTATTGTGTTCTTTGGTGGGCCTGATGATCGAGAGGCTCTTGAGTTGGGGAAGAAAATGGCTGAACACCCGACAGTTGAAGTGACGGTTGTAAGGTTCGTTGAGAAAGATGGGTTGAATAGTGATAACGTTGTGTTACGCCGATCACCCCACAGGAGTAGCGAGGATAGCTATAGCTTCTCCATTGCTAAAATGAACCGCCAACAAGAAAAGGAGTTGGATGAGAAGGCAATGGCAGAGTTTAGAAGCAAGTGGGAGGGGACGGTGAAGTATATTGAGAAGGTTAGTGGGAATGTTGTGGAGGAGGTGTCAGCTATTGGGGAAAGTGGGGATTATGATTTGATAATAGTTGGGAAGGGTAGGTTCCCATCGAATATGGTGGCAGAACTAGCAGAGAGGGAAGCAGAGCATGCTGAGTTAGGACCTATAGGGGACATTTTAGCATCATCTACCGGACAAAAGAAGATAGTGTCATCGGTTTTGGTTATTCAACAACATGATGTGGCGTTGATGGAGGAGGCTCCTATGTGTAAGGTGCATGATGAGAATATAGTTCAGAATTTGTCCTTCAGGGGGGAGATTTCTGTAGCCAATGACAATGCAGTGTAA 2553 0.4904 MAPLNITNIKTSSNGVWQGDNPLNYAFPLLIVQTTLVLVVSRALAFLFKPLRQPKVIAEIVGGILLGPSALGRNKSYLHRIFPSWSTPTLESVASIGLLFFLFLVGLELDLNSIRRSGRKAFTIAAVGISVPFIGGIGVAFVLRKTIEGADKVGFGQFIVFMGVALSITAFPVLARILAELKLLTTRVGETAMAAAAFNDVAAWILLALAIALAGNGNGESKSPLVSIWVLLSGAAFVVFMMVVIGPLMTRVARRCSWENEAVDEVYICLTLAGVMVSGFITDLIGIHSIFGAFVFGLTIPKSGNFAERLIERIEDFVLGLLLPLYFASSGLKTDVTKIRGGKAWGLLALVISTACAGKILGTFIVAIMCRIPAMESLTLGVLMNTKGLVELIVLNIGKEKKVLNDEIFAILVLMALFTTFITTPLVMAIYKPARGITDKTCRKLGDLSSHSNKKDMDELRVLACIHGPSNIPPIISLIESTRGTKKSLIKVFIMHLVELTERSSSIIMVQRARKNGFPFFNRFNRDEWYNRLAGAFQAYSQLGRVSVRSTTAISSLSTMHEDICHVAEEKRVTMILLPFHKQWRMEVDNDDNEAHVHEVLENAGHEWRGVNQRVLKNAPCSVAVLVDRGHGIGSKTPGPNTTEAQRICIVFFGGPDDREALELGKKMAEHPTVEVTVVRFVEKDGLNSDNVVLRRSPHRSSEDSYSFSIAKMNRQQEKELDEKAMAEFRSKWEGTVKYIEKVSGNVVEEVSAIGESGDYDLIIVGKGRFPSNMVAELAEREAEHAELGPIGDILASSTGQKKIVSSVLVIQQHDVALMEEAPMCKVHDENIVQNLSFRGEISVANDNAV. 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g04870 850 Gene3D - 541 787 - -
Seca1g04870 850 PANTHER CATION/H + ANTIPORTER 8 815 - -
Seca1g04870 850 FunFam Cation/H(+) antiporter 15 29 438 - -
Seca1g04870 850 Pfam Sodium/hydrogen exchanger family 37 426 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Seca1g04870 850 Pfam Universal stress protein family 646 769 IPR006016 -
Seca1g04870 850 Gene3D - 29 436 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g04870 Seca-Chr1 151255135 151260838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g04870 76 844 Antiporter Super Family AT3G53720 65.434 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g04870 K26731 - jre:108999019 1194.1